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LRCH4 leucine rich repeats and calponin homology domain containing 4 [ Equus caballus (horse) ]

Gene ID: 100067371, updated on 8-Mar-2024

Summary

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Official Symbol
LRCH4provided by VGNC
Official Full Name
leucine rich repeats and calponin homology domain containing 4provided by VGNC
Primary source
VGNC:VGNC:19747
See related
Ensembl:ENSECAG00000023227
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See LRCH4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
18
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (8896528..8907421, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 13 NC_009156.2 (8608235..8618421, complement)

Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene insulin receptor substrate 3 Neighboring gene Sin3A associated protein 25 Neighboring gene uncharacterized LOC111776194 Neighboring gene F-box protein 24 Neighboring gene procollagen C-endopeptidase enhancer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and calponin homology domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009156.3 Reference EquCab3.0 Primary Assembly

    Range
    8896528..8907421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014729878.2 → XP_014585364.2  leucine-rich repeat and calponin homology domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H1T6
    Related
    ENSECAP00000027435.3, ENSECAT00000055796.3
    Conserved Domains (3) summary
    smart00033
    Location:543 → 635
    CH; Calponin homology domain
    COG4886
    Location:74 → 255
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:46 → 69
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_023655351.1 → XP_023511119.1  leucine-rich repeat and calponin homology domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    F6VVR4
    Related
    ENSECAP00000040268.2, ENSECAT00000062036.2
    Conserved Domains (3) summary
    smart00033
    Location:543 → 634
    CH; Calponin homology domain
    COG4886
    Location:74 → 255
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:46 → 69
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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