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SHLD1 shieldin complex subunit 1 [ Equus caballus (horse) ]

Gene ID: 100065580, updated on 17-Aug-2024

Summary

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Official Symbol
SHLD1provided by VGNC
Official Full Name
shieldin complex subunit 1provided by VGNC
Primary source
VGNC:VGNC:58955
See related
Ensembl:ENSECAG00000055447
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
C22H20orf196
Orthologs
human mouse all
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Genomic context

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See SHLD1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 22 NC_009165.3 (17677253..17763174, complement)

Chromosome 22 - NC_009165.3Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 6 non-catalytic subunit Neighboring gene minichromosome maintenance 8 homologous recombination repair factor Neighboring gene chromogranin B Neighboring gene uncharacterized LOC102147657 Neighboring gene glycerophosphocholine phosphodiesterase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009165.3 Chromosome 22 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of isotype switching IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
shieldin complex subunit 1
Names
chromosome 22 C20orf196 homolog
uncharacterized protein C20orf196 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009165.3 Reference EquCab3.0 Primary Assembly

    Range
    17677253..17763174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023626147.1 → XP_023481915.1  shieldin complex subunit 1 isoform X2

    Conserved Domains (1) summary
    pfam15021
    Location:5 → 146
    DUF4521; Protein of unknown function (DUF4521)

  2. XM_001496124.4 → XP_001496174.1  shieldin complex subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HDV5, A0A9L0SLX3
    Related
    ENSECAP00000031741.3, ENSECAT00000052645.3
    Conserved Domains (1) summary
    pfam15021
    Location:5 → 202
    DUF4521; Protein of unknown function (DUF4521)

  3. XM_023626148.1 → XP_023481916.1  shieldin complex subunit 1 isoform X3

    Conserved Domains (1) summary
    pfam15021
    Location:5 → 61
    DUF4521; Protein of unknown function (DUF4521)

RNA

  1. XR_002802804.1 RNA Sequence

  2. XR_002802802.1 RNA Sequence

  3. XR_002802803.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials