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Shld1 shieldin complex subunit 1 [ Mus musculus (house mouse) ]

Gene ID: 73747, updated on 31-Jan-2019

Summary

Official Symbol
Shld1provided by MGI
Official Full Name
shieldin complex subunit 1provided by MGI
Primary source
MGI:MGI:1920997
See related
Ensembl:ENSMUSG00000044991
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110034G24Rik
Expression
Ubiquitous expression in heart adult (RPKM 2.8), CNS E14 (RPKM 2.2) and 28 other tissues See more
Orthologs

Genomic context

See Shld1 in Genome Data Viewer
Location:
2 F2; 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (132686876..132751055)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (132516019..132576791)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2S pseudogene Neighboring gene high mobility group box 2 pseudogene Neighboring gene armadillo repeat containing 1 pseudogene Neighboring gene predicted gene, 38455 Neighboring gene chromogranin B Neighboring gene tRNA methyltransferase 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Homology

Clone Names

  • MGC118301

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
chromosome ISO
Inferred from Sequence Orthology
more info
 
site of double-strand break ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
shieldin complex subunit 1; uncharacterized protein C20orf196 homolog
Names
RINN1-REV7-interacting novel NHEJ regulator 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358260.1NP_001345189.1  shieldin complex subunit 1

    Status: VALIDATED

    Source sequence(s)
    AK004090, AL935270, BC100475
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
  2. NM_001358261.1NP_001345190.1  shieldin complex subunit 1

    Status: VALIDATED

    Source sequence(s)
    AA242640, BC100475
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
  3. NM_028637.2NP_082913.1  shieldin complex subunit 1

    See identical proteins and their annotated locations for NP_082913.1

    Status: VALIDATED

    Source sequence(s)
    BC100475
    Consensus CDS
    CCDS50727.1
    UniProtKB/Swiss-Prot
    Q9D112
    UniProtKB/TrEMBL
    B2RR16
    Related
    ENSMUSP00000105759.2, ENSMUST00000110132.2
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    132686876..132751055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239801.2XP_011238103.1  uncharacterized protein C20orf196 homolog isoform X3

    UniProtKB/Swiss-Prot
    Q9D112
    UniProtKB/TrEMBL
    B2RR16
    Related
    ENSMUSP00000057009.4, ENSMUST00000061891.10
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
  2. XM_011239800.1XP_011238102.1  uncharacterized protein C20orf196 homolog isoform X3

    See identical proteins and their annotated locations for XP_011238102.1

    UniProtKB/Swiss-Prot
    Q9D112
    UniProtKB/TrEMBL
    B2RR16
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
  3. XM_011239798.1XP_011238100.1  uncharacterized protein C20orf196 homolog isoform X1

    Conserved Domains (1) summary
    pfam15021
    Location:61260
    DUF4521; Protein of unknown function (DUF4521)
  4. XM_011239803.1XP_011238105.1  uncharacterized protein C20orf196 homolog isoform X3

    UniProtKB/Swiss-Prot
    Q9D112
    UniProtKB/TrEMBL
    B2RR16
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
  5. XM_011239799.1XP_011238101.1  uncharacterized protein C20orf196 homolog isoform X2

    Conserved Domains (1) summary
    pfam15021
    Location:5204
    DUF4521; Protein of unknown function (DUF4521)
  6. XM_011239802.2XP_011238104.1  uncharacterized protein C20orf196 homolog isoform X3

    See identical proteins and their annotated locations for XP_011238104.1

    UniProtKB/Swiss-Prot
    Q9D112
    UniProtKB/TrEMBL
    B2RR16
    Conserved Domains (1) summary
    pfam15021
    Location:3202
    DUF4521; Protein of unknown function (DUF4521)
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