MXRA5 matrix remodeling associated 5 [Equus caballus (horse)] - Gene

Summary

Official Symbol: MXRA5provided by VGNC
Official Full Name: matrix remodeling associated 5provided by VGNC
Primary source: VGNC:VGNC:20457
See related: Ensembl:ENSECAG00000017487
Gene type: protein coding
RefSeq status: MODEL
Organism: Equus caballus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs: human all
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Genomic context

Location:: chromosome: X

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
103	current	EquCab3.0 (GCF_002863925.1)	X	NC_009175.3 (1511213..1541902, complement)
102	previous assembly	EquCab2.0 (GCF_000002305.2)	X	NC_009175.2 (731215..761341, complement)

Chromosome X - NC_009175.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MXRA5 (e-PCR)
- UniSTS:506494

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: matrix-remodeling-associated protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

NC_009175.3 Reference EquCab3.0 Primary Assembly

Range

1511213..1541902 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_023634194.1 → XP_023489962.1 matrix-remodeling-associated protein 5 isoform X1

UniProtKB/TrEMBL

A0A9L0R4S6

Conserved Domains (10) summary

smart00082
Location:278 → 326

LRRCT; Leucine rich repeat C-terminal domain

smart00409
Location:2608 → 2692

IG; Immunoglobulin

smart00410
Location:2212 → 2297

IG_like; Immunoglobulin like

pfam07679
Location:2415 → 2486

I-set; Immunoglobulin I-set domain

sd00033
Location:99 → 116

LRR_RI; leucine-rich repeat [structural motif]

pfam13855
Location:189 → 256

LRR_8; Leucine rich repeat

pfam13927
Location:1911 → 1991

Ig_3; Immunoglobulin domain

cd00096
Location:654 → 723

Ig; Immunoglobulin domain

cl11960
Location:2024 → 2101

Ig; Immunoglobulin domain

cl25496
Location:1137 → 1463

Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
XM_001500228.4 → XP_001500278.2 matrix-remodeling-associated protein 5 isoform X2

UniProtKB/TrEMBL

A0A9L0R4S6, F6PJV0

Related

ENSECAP00000015067.2, ENSECAT00000018467.4

Conserved Domains (11) summary

cd00096
Location:2774 → 2847

Ig; Immunoglobulin domain

smart00408
Location:614 → 681

IGc2; Immunoglobulin C-2 Type

smart00082
Location:242 → 290

LRRCT; Leucine rich repeat C-terminal domain

smart00409
Location:2572 → 2656

IG; Immunoglobulin

smart00410
Location:1883 → 1968

IG_like; Immunoglobulin like

pfam07679
Location:1981 → 2065

I-set; Immunoglobulin I-set domain

sd00033
Location:63 → 80

LRR_RI; leucine-rich repeat [structural motif]

pfam12799
Location:153 → 193

LRR_4; Leucine Rich repeats (2 copies)

pfam13855
Location:153 → 220

LRR_8; Leucine rich repeat

pfam17061
Location:1401 → 1595

PARM; PARM

cl11960
Location:1988 → 2065

Ig; Immunoglobulin domain