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RBM27 RNA binding motif protein 27 [ Equus caballus (horse) ]

Gene ID: 100061055, updated on 15-Aug-2024

Summary

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Gene symbol
RBM27
Gene description
RNA binding motif protein 27
See related
Ensembl:ENSECAG00000000883
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 14 NC_009157.3 (30775659..30844794, complement)

Chromosome 14 - NC_009157.3Genomic Context describing neighboring genes Neighboring gene transcription elongation regulator 1 Neighboring gene POU class 4 homeobox 3 Neighboring gene 40S ribosomal protein S27-like Neighboring gene putative D-tyrosyl-tRNA(Tyr) deacylase 2 pseudogene Neighboring gene leucyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009157.3 Chromosome 14 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 27
Names
RNA-binding protein 27-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009157.3 Reference EquCab3.0 Primary Assembly

    Range
    30775659..30844794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023617495.1 → XP_023473263.1  RNA-binding protein 27 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2HV50, A0A3Q2I8I3
    Related
    ENSECAP00000043714.2, ENSECAT00000062261.3
    Conserved Domains (5) summary
    cd12517
    Location:546 → 621
    RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
    pfam00642
    Location:277 → 299
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:918 → 960
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl27210
    Location:757 → 851
    Mnd1; Mnd1 family

  2. XM_023617493.1 → XP_023473261.1  RNA-binding protein 27 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HV50
    Conserved Domains (5) summary
    cd12517
    Location:601 → 676
    RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
    pfam00642
    Location:277 → 299
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:973 → 1015
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25732
    Location:807 → 934
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_023617494.1 → XP_023473262.1  RNA-binding protein 27 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HV50
    Conserved Domains (5) summary
    cd12517
    Location:547 → 622
    RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
    pfam00642
    Location:278 → 300
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:919 → 961
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl27210
    Location:758 → 852
    Mnd1; Mnd1 family

  4. XM_023617492.1 → XP_023473260.1  RNA-binding protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HV50, F6TU51
    Related
    ENSECAP00000001137.2, ENSECAT00000001501.4
    Conserved Domains (5) summary
    cd12517
    Location:602 → 677
    RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
    pfam00642
    Location:278 → 300
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl02562
    Location:7 → 72
    PWI; PWI domain
    cl17169
    Location:974 → 1016
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25732
    Location:808 → 935
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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