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TUFT1 tuftelin 1 [ Equus caballus (horse) ]

Gene ID: 100059946, updated on 8-Mar-2024

Summary

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Official Symbol
TUFT1provided by VGNC
Official Full Name
tuftelin 1provided by VGNC
Primary source
VGNC:VGNC:24666
See related
Ensembl:ENSECAG00000011044
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TUFT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (42312535..42346096, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 5 NC_009148.2 (45700107..45733656, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 3 Neighboring gene sorting nexin 27 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene Neighboring gene cingulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in I band IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tuftelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    42312535..42346096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014739936.2 → XP_014595422.1  tuftelin isoform X4

    UniProtKB/TrEMBL
    A0A3Q2GXW1
    Related
    ENSECAP00000030937.2, ENSECAT00000036351.2
    Conserved Domains (1) summary
    pfam06364
    Location:86 → 184
    DUF1068; Protein of unknown function (DUF1068)

  2. XM_001492357.6 → XP_001492407.3  tuftelin isoform X2

    UniProtKB/TrEMBL
    F6ZH40
    Related
    ENSECAP00000009083.2, ENSECAT00000011601.3
    Conserved Domains (1) summary
    pfam06364
    Location:116 → 214
    DUF1068; Protein of unknown function (DUF1068)

  3. XM_003365031.4 → XP_003365079.1  tuftelin isoform X1

    UniProtKB/TrEMBL
    F6ZH40
    Conserved Domains (1) summary
    pfam06364
    Location:141 → 239
    DUF1068; Protein of unknown function (DUF1068)

  4. XM_005610130.3 → XP_005610187.1  tuftelin isoform X3

    UniProtKB/TrEMBL
    A0A3Q2GXW1
    Conserved Domains (1) summary
    pfam06364
    Location:111 → 209
    DUF1068; Protein of unknown function (DUF1068)
Nucleotide Protein
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