U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CD40LG CD40 ligand [ Equus caballus (horse) ]

Gene ID: 100054624, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
CD40LGprovided by VGNC
Official Full Name
CD40 ligandprovided by VGNC
Primary source
VGNC:VGNC:16269
See related
Ensembl:ENSECAG00000011392
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
cd154; TNLG8B
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CD40LG in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (112732676..112754284)
102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (108705953..108727574)

Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene HIV-1 Tat specific factor 1 Neighboring gene vestigial like family member 1 Neighboring gene Rac/Cdc42 guanine nucleotide exchange factor 6 Neighboring gene putative 60S ribosomal protein L39-like 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Macrophage effector responses of horses are influenced by expression of CD154. Sponseller BA, et al. Vet Immunol Immunopathol, 2016 Nov 1. PMID 27692094, Free PMC Article
  2. Comparative genomic analysis of eutherian tumor necrosis factor ligand genes. Premzl M. Immunogenetics, 2016 Feb. PMID 26646413
  3. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CD40 ligand
Names
CD40 ligand-like protein
tumor necrosis factor ligand 8B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009175.3 Reference EquCab3.0 Primary Assembly

    Range
    112732676..112754284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005614531.3 → XP_005614588.1  CD40 ligand isoform X2

    See identical proteins and their annotated locations for XP_005614588.1

    UniProtKB/TrEMBL
    F7AR26
    Conserved Domains (1) summary
    pfam00229
    Location:106 → 229
    TNF; TNF(Tumour Necrosis Factor) family

  2. XM_001490011.5 → XP_001490061.1  CD40 ligand isoform X1

    See identical proteins and their annotated locations for XP_001490061.1

    UniProtKB/TrEMBL
    A0A5F5PNZ0, F7AR26
    Related
    ENSECAP00000050128.1, ENSECAT00000071053.2
    Conserved Domains (1) summary
    pfam00229
    Location:138 → 261
    TNF; TNF(tumor Necrosis Factor) family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials