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osr2 odd-skipped related transcription factor 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100038196, updated on 17-Aug-2024

Summary

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Official Symbol
osr2provided by Xenbase
Official Full Name
odd-skipped related transcription factor 2provided by Xenbase
Primary source
Xenbase:XB-GENE-481907
See related
Ensembl:ENSXETG00000017850
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xosr2; osr2-a; osr2-b
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (128938728..128948505, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (113906245..113915837, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 13 homolog B Neighboring gene cytochrome c oxidase subunit VIc Neighboring gene serine/threonine kinase 3 Neighboring gene potassium voltage-gated channel modifier subfamily S member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specification in Xenopus. Rankin SA, et al. Development, 2012 Aug. PMID 22791896, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Osr1/Osr2 normally repress bmp4 expression in the lateral plate mesoderm prior to respiratory specification.
    Title: Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specification in Xenopus.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein odd-skipped-related 2
Names
odd-skipped related 2
odd-skipped related transciption factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    128938728..128948505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004915139.3 → XP_004915196.1  protein odd-skipped-related 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R410
    Conserved Domains (3) summary
    sd00017
    Location:174 → 194
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:172 → 194
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:186 → 211
    zf-H2C2_2; Zinc-finger double domain

  2. XM_002934408.3 → XP_002934454.1  protein odd-skipped-related 2 isoform X1

    UniProtKB/TrEMBL
    F6ZX49
    Related
    ENSXETP00000038694.3, ENSXETT00000038694.5
    Conserved Domains (3) summary
    COG5048
    Location:251 → 312
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:174 → 194
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:186 → 211
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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