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PDE6B phosphodiesterase 6B [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100018608, updated on 8-May-2024

Summary

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Gene symbol
PDE6B
Gene description
phosphodiesterase 6B
See related
EnsemblRapid:ENSMODG00000005968
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 6 NC_077232.1 (72381817..72516663)
103 previous assembly MonDom5 (GCF_000002295.2) 5 NC_008805.1 (239699934..239791798, complement)

Chromosome 6 - NC_077232.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103105182 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) Neighboring gene transmembrane protein 271 Neighboring gene myosin light chain 5 Neighboring gene solute carrier family 49 member 3 Neighboring gene heat shock cognate 71 kDa protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retina development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor outer segment membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta
Names
phosphodiesterase 6B, cGMP-specific, rod, beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077232.1 Reference mMonDom1.pri

    Range
    72381817..72516663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056802244.1 → XP_056658222.1  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta isoform X2

  2. XM_001366290.4 → XP_001366327.1  rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta isoform X1

    UniProtKB/TrEMBL
    F6W037
    Related
    ENSMODP00000007377.2, ENSMODT00000007526.5
    Conserved Domains (2) summary
    smart00065
    Location:71 → 230
    GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
    pfam00233
    Location:556 → 800
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials