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DDX17 DEAD-box helicase 17 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100013583, updated on 8-May-2024

Summary

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Gene symbol
DDX17
Gene description
DEAD-box helicase 17
See related
EnsemblRapid:ENSMODG00000009681
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See DDX17 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 5 NC_077231.1 (101850843..101871142, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 8 NC_008808.1 (65221332..65241348)

Chromosome 5 - NC_077231.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103105657 Neighboring gene potassium inwardly rectifying channel subfamily J member 4 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 3 Neighboring gene DNA meiotic recombinase 1 Neighboring gene uncharacterized LOC130454538 Neighboring gene uncharacterized LOC130454539 Neighboring gene family with sequence similarity 227 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX17
Names
DEAD (Asp-Glu-Ala-Asp) box helicase 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077231.1 Reference mMonDom1.pri

    Range
    101850843..101871142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007503199.3 → XP_007503261.1  probable ATP-dependent RNA helicase DDX17

    UniProtKB/TrEMBL
    F6YBU8
    Related
    ENSMODP00000012104.4, ENSMODT00000012328.5
    Conserved Domains (4) summary
    smart00487
    Location:109 → 314
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:310 → 442
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:94 → 299
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam16210
    Location:511 → 570
    Keratin_2_tail; Keratin type II cytoskeletal 1 tail
Nucleotide Protein
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