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SEC22B SEC22 homolog B, vesicle trafficking protein [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100011676, updated on 8-May-2024

Summary

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Gene symbol
SEC22B
Gene description
SEC22 homolog B, vesicle trafficking protein
See related
EnsemblRapid:ENSMODG00000018705
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See SEC22B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (492753192..492780955, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (492581555..492609912, complement)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene notch receptor 2 Neighboring gene uncharacterized LOC103094909 Neighboring gene myomegalin Neighboring gene uncharacterized LOC130457518 Neighboring gene uncharacterized LOC130457519

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-trafficking protein SEC22b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    492753192..492780955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001363090.5 → XP_001363127.1  vesicle-trafficking protein SEC22b

    See identical proteins and their annotated locations for XP_001363127.1

    UniProtKB/TrEMBL
    F7FCL5
    Related
    ENSMODP00000088685.1, ENSMODT00000142770.1
    Conserved Domains (2) summary
    cd15866
    Location:132 → 195
    R-SNARE_SEC22; SNARE motif of SEC22
    cd14824
    Location:3 → 126
    Longin; longin domain
Nucleotide Protein
Heading Accession and Version

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