Escherichia coli (ID 592372) - BioProject

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Accession: PRJNA592372 ID: 592372

Escherichia coli

Comparative genomics of urinary Escherichia coli isolates associated with different clinical phenotypes

See Genome Information for Escherichia coli

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Escherichia coli is the most common cause of asymptomatic bacteriuria, cystitis, pyelonephritis and urosepsis. More...

Accession	PRJNA592372
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Biggel M et al., "Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages.", Nat Commun, 2020 Nov 24;11(1):5968
Submission	Registration date: 10-Aug-2020 LMM, University of Antwerp
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	185
WGS master	162
Genomic DNA	23
SRA Experiments	191
Protein Sequences	47810
Publications
PubMed	1
PMC	1
Other datasets
BioSample	172
Assembly	172

Assembly details:

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Assembly level

Number of Assemblies

10
140
22
172

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_014140405.1	JAAMFO000000000		SAMN13423074	US30	Escherichia coli
GCA_014140385.1	JAAMFQ000000000		SAMN13423071	US27	Escherichia coli
GCA_014140395.1	JAAMFS000000000		SAMN13423069	US25	Escherichia coli
GCA_014140365.1	JAAMFR000000000		SAMN13423070	US26	Escherichia coli
GCA_014140375.1	JAAMFP000000000		SAMN13423072	US28	Escherichia coli
GCA_014141495.1	JAAMHS000000000		SAMN13423015	MVAST0312	Escherichia coli
GCA_014141485.1	JAAMHU000000000		SAMN13423013	MVAST0296	Escherichia coli
GCA_014141465.1	JAAMHR000000000		SAMN13423016	MVAST0318	Escherichia coli
GCA_014141445.1	JAAMHP000000000		SAMN13423018	MVAST0325	Escherichia coli
GCA_014141425.1	JAAMHQ000000000		SAMN13423017	MVAST0322	Escherichia coli
GCA_014141395.1	JAAMHO000000000		SAMN13423019	MVAST0328	Escherichia coli
GCA_014141365.1	JAAMHN000000000		SAMN13423020	MVAST0348	Escherichia coli
GCA_014141355.1	JAAMHL000000000		SAMN13423022	MVAST0363	Escherichia coli
GCA_014141345.1	JAAMHM000000000		SAMN13423021	MVAST0350	Escherichia coli
GCA_014141325.1	JAAMHJ000000000		SAMN13423024	MVAST0379	Escherichia coli
GCA_014141295.1	JAAMHI000000000		SAMN13423025	MVAST0399	Escherichia coli
GCA_014141285.1	JAAMHK000000000		SAMN13423023	MVAST0366	Escherichia coli
GCA_014141255.1	JAAMHF000000000		SAMN13423028	RT_ABU_109	Escherichia coli
GCA_014141245.1	JAAMHG000000000		SAMN13423027	MVAST0403	Escherichia coli
GCA_014141215.1	JAAMHH000000000		SAMN13423026	MVAST0401	Escherichia coli
GCA_014141195.1	JAAMHE000000000		SAMN13423029	RT_ABU_11	Escherichia coli
GCA_014141185.1	JAAMHD000000000		SAMN13423030	RT_ABU_128	Escherichia coli
GCA_014141165.1	JAAMHC000000000		SAMN13423031	RT_ABU_132	Escherichia coli
GCA_014141125.1	JAAMHA000000000		SAMN13423033	RT_ABU_140	Escherichia coli
GCA_014141135.1	JAAMHB000000000		SAMN13423032	RT_ABU_137	Escherichia coli
GCA_014141095.1	JAAMGZ000000000		SAMN13423034	RT_ABU_155	Escherichia coli
GCA_014141075.1	JAAMGX000000000		SAMN13423036	RT_ABU_202	Escherichia coli
GCA_014141055.1	JAAMGY000000000		SAMN13423035	RT_ABU_2	Escherichia coli
GCA_014141045.1	JAAMGW000000000		SAMN13423037	RT_ABU_207	Escherichia coli
GCA_014141015.1	JAAMGU000000000		SAMN13423039	RT_ABU_253	Escherichia coli
GCA_014141005.1	JAAMGV000000000		SAMN13423038	RT_ABU_234	Escherichia coli
GCA_014140975.1	JAAMGS000000000		SAMN13423041	RT_ABU_295	Escherichia coli
GCA_014140955.1	JAAMGT000000000		SAMN13423040	RT_ABU_261	Escherichia coli
GCA_014140945.1	JAAMGR000000000		SAMN13423042	RT_ABU_3	Escherichia coli
GCA_014140925.1	JAAMGQ000000000		SAMN13423043	RT_ABU_442	Escherichia coli
GCA_014140885.1	JAAMGP000000000		SAMN13423044	RT_ABU_445	Escherichia coli
GCA_014140855.1	JAAMGO000000000		SAMN13423045	RT_ABU_477	Escherichia coli
GCA_014140875.1	JAAMGM000000000		SAMN13423047	US01	Escherichia coli
GCA_014140845.1	JAAMGN000000000		SAMN13423046	RT_ABU_54	Escherichia coli
GCA_014140815.1	JAAMGL000000000		SAMN13423048	US02	Escherichia coli
GCA_014140775.1	JAAMGI000000000		SAMN13423052	US06	Escherichia coli
GCA_014140785.1	JAAMGJ000000000		SAMN13423051	US05	Escherichia coli
GCA_014140755.1	JAAMGK000000000		SAMN13423050	US04	Escherichia coli
GCA_014140745.1	JAAMGH000000000		SAMN13423053	US07	Escherichia coli
GCA_014140725.1	JAAMGF000000000		SAMN13423055	US09	Escherichia coli
GCA_014140705.1	JAAMGG000000000		SAMN13423054	US08	Escherichia coli
GCA_014140665.1	JAAMGD000000000		SAMN13423057	US11	Escherichia coli
GCA_014140675.1	JAAMGE000000000		SAMN13423056	US10	Escherichia coli
GCA_014140645.1	JAAMGC000000000		SAMN13423059	US13	Escherichia coli
GCA_014140585.1	JAAMGA000000000		SAMN13423061	US15	Escherichia coli
GCA_014140605.1	JAAMGB000000000		SAMN13423060	US14	Escherichia coli
GCA_014140575.1	JAAMFY000000000		SAMN13423063	US18	Escherichia coli
GCA_014140565.1	JAAMFZ000000000		SAMN13423062	US16	Escherichia coli
GCA_014140495.1	JAAMFT000000000		SAMN13423068	US23	Escherichia coli
GCA_014140515.1	JAAMFX000000000		SAMN13423064	US19	Escherichia coli
GCA_014140485.1	JAAMFV000000000		SAMN13423066	US21	Escherichia coli
GCA_014140475.1	JAAMFU000000000		SAMN13423067	US22	Escherichia coli
GCA_014140465.1	JAAMFW000000000		SAMN13423065	US20	Escherichia coli
GCA_014131635.1		3	SAMN13422981	6-Pyelo	Escherichia coli
GCA_014131655.1		2	SAMN13422969	2-Pyelo	Escherichia coli
GCA_014131615.1		3	SAMN13422983	78-Pyelo	Escherichia coli
GCA_014131595.1		2	SAMN13423049	US03	Escherichia coli
GCA_014131575.1		2	SAMN13423058	US12	Escherichia coli
GCA_014131555.1		3	SAMN13423073	US29	Escherichia coli
GCA_014131535.1		3	SAMN13423075	US31	Escherichia coli
GCA_014131515.1		2	SAMN09405647	V7	Escherichia coli
GCA_014131495.1		2	SAMN09405653	19	Escherichia coli
GCA_014131475.1		1	SAMN13423076	US32	Escherichia coli
GCA_014142785.1	JAAMHV000000000		SAMN13423012	MVAST0291	Escherichia coli
GCA_014144845.1	JAAMLT000000000		SAMN13422907	LtABU01	Escherichia coli
GCA_014144805.1	JAAMLS000000000		SAMN13422908	LtABU02	Escherichia coli
GCA_014144795.1	JAAMLR000000000		SAMN13422909	LtABU03	Escherichia coli
GCA_014144765.1	JAAMLP000000000		SAMN13422911	LtABU05	Escherichia coli
GCA_014144755.1	JAAMLQ000000000		SAMN13422910	LtABU04	Escherichia coli
GCA_014144745.1	JAAMLO000000000		SAMN13422912	LtABU07	Escherichia coli
GCA_014144725.1	JAAMLN000000000		SAMN13422913	LtABU08	Escherichia coli
GCA_014144705.1	JAAMLM000000000		SAMN13422914	LtABU09	Escherichia coli
GCA_014144655.1	JAAMLJ000000000		SAMN13422917	LtABU12	Escherichia coli
GCA_014144665.1	JAAMLL000000000		SAMN13422915	LtABU10	Escherichia coli
GCA_014144645.1	JAAMLI000000000		SAMN13422918	LtABU13	Escherichia coli
GCA_014144625.1	JAAMLH000000000		SAMN13422919	LtABU14	Escherichia coli
GCA_014144605.1	JAAMLK000000000		SAMN13422916	LtABU11	Escherichia coli
GCA_014144555.1	JAAMLC000000000		SAMN13422924	LtABU19	Escherichia coli
GCA_014144545.1	JAAMLF000000000		SAMN13422921	LtABU16	Escherichia coli
GCA_014144525.1	JAAMLD000000000		SAMN13422923	LtABU18	Escherichia coli
GCA_014144535.1	JAAMLG000000000		SAMN13422920	LtABU15	Escherichia coli
GCA_014144505.1	JAAMLE000000000		SAMN13422922	LtABU17	Escherichia coli
GCA_014144475.1	JAAMLA000000000		SAMN13422926	LtABU21	Escherichia coli
GCA_014144445.1	JAAMLB000000000		SAMN13422925	LtABU20	Escherichia coli
GCA_014144415.1	JAAMKX000000000		SAMN13422929	LtABU24	Escherichia coli
GCA_014144435.1	JAAMKY000000000		SAMN13422928	LtABU23	Escherichia coli
GCA_014144405.1	JAAMKW000000000		SAMN13422930	LtABU25	Escherichia coli
GCA_014144365.1	JAAMKZ000000000		SAMN13422927	LtABU22	Escherichia coli
GCA_014144375.1	JAAMKV000000000		SAMN13422931	LtABU26	Escherichia coli
GCA_014144305.1	JAAMKU000000000		SAMN13422932	LtABU27	Escherichia coli
GCA_014144315.1	JAAMKT000000000		SAMN13422933	LtABU28	Escherichia coli
GCA_014144295.1	JAAMKR000000000		SAMN13422935	LtABU30	Escherichia coli
GCA_014144285.1	JAAMKS000000000		SAMN13422934	LtABU29	Escherichia coli
GCA_014144255.1	JAAMKQ000000000		SAMN13422936	LtABU31	Escherichia coli
GCA_014144245.1	JAAMKP000000000		SAMN13422937	LtABU32	Escherichia coli
GCA_014144215.1	JAAMKO000000000		SAMN13422938	LtABU33	Escherichia coli
GCA_014144195.1	JAAMKL000000000		SAMN13422941	LtABU36	Escherichia coli
GCA_014144185.1	JAAMKM000000000		SAMN13422940	LtABU35	Escherichia coli
GCA_014144165.1	JAAMKN000000000		SAMN13422939	LtABU34	Escherichia coli
GCA_014144135.1	JAAMKI000000000		SAMN13422944	LtABU39	Escherichia coli
GCA_014144125.1	JAAMKK000000000		SAMN13422942	LtABU37	Escherichia coli
GCA_014144095.1	JAAMKJ000000000		SAMN13422943	LtABU38	Escherichia coli
GCA_014144075.1	JAAMKH000000000		SAMN13422945	LtABU40	Escherichia coli
GCA_014144055.1	JAAMKG000000000		SAMN13422946	LtABU41	Escherichia coli
GCA_014144045.1	JAAMKE000000000		SAMN13422948	LtABU43	Escherichia coli
GCA_014144015.1	JAAMKF000000000		SAMN13422947	LtABU42	Escherichia coli
GCA_014143995.1	JAAMKB000000000		SAMN13422951	108-Pyelo	Escherichia coli
GCA_014143975.1	JAAMKD000000000		SAMN13422949	LtABU44	Escherichia coli
GCA_014143965.1	JAAMKC000000000		SAMN13422950	101-Pyelo	Escherichia coli
GCA_014143935.1	JAAMKA000000000		SAMN13422952	10-Pyelo	Escherichia coli
GCA_014143915.1	JAAMJY000000000		SAMN13422954	117-Pyelo	Escherichia coli
GCA_014143905.1	JAAMJX000000000		SAMN13422955	128-Pyelo	Escherichia coli
GCA_014143885.1	JAAMJZ000000000		SAMN13422953	112-Pyelo	Escherichia coli
GCA_014143865.1	JAAMJW000000000		SAMN13422956	145-Pyelo	Escherichia coli
GCA_014143825.1	JAAMJT000000000		SAMN13422959	17-Pyelo	Escherichia coli
GCA_014143805.1	JAAMJU000000000		SAMN13422958	161-Pyelo	Escherichia coli
GCA_014143785.1	JAAMJV000000000		SAMN13422957	15-Pyelo	Escherichia coli
GCA_014143775.1	JAAMJS000000000		SAMN13422960	181-Pyelo	Escherichia coli
GCA_014143765.1	JAAMJR000000000		SAMN13422961	185-Pyelo	Escherichia coli
GCA_014143745.1	JAAMJQ000000000		SAMN13422962	188-Pyelo	Escherichia coli
GCA_014143715.1	JAAMJO000000000		SAMN13422964	194-Pyelo	Escherichia coli
GCA_014143705.1	JAAMJP000000000		SAMN13422963	193-Pyelo	Escherichia coli
GCA_014143665.1	JAAMJK000000000		SAMN13422968	24-Pyelo	Escherichia coli
GCA_014143655.1	JAAMJN000000000		SAMN13422965	201-Pyelo	Escherichia coli
GCA_014143645.1	JAAMJM000000000		SAMN13422966	204-Pyelo	Escherichia coli
GCA_014143625.1	JAAMJL000000000		SAMN13422967	20-Pyelo	Escherichia coli
GCA_014143605.1	JAAMJJ000000000		SAMN13422970	30-Pyelo	Escherichia coli
GCA_014143575.1	JAAMJI000000000		SAMN13422971	31-Pyelo	Escherichia coli
GCA_014143565.1	JAAMJH000000000		SAMN13422972	32-Pyelo	Escherichia coli
GCA_014143535.1	JAAMJF000000000		SAMN13422974	3-Pyelo	Escherichia coli
GCA_014143525.1	JAAMJE000000000		SAMN13422975	45-Pyelo	Escherichia coli
GCA_014143505.1	JAAMJG000000000		SAMN13422973	33-Pyelo	Escherichia coli
GCA_014143475.1	JAAMJD000000000		SAMN13422976	47-Pyelo	Escherichia coli
GCA_014143445.1	JAAMJC000000000		SAMN13422977	54-Pyelo	Escherichia coli
GCA_014143425.1	JAAMJB000000000		SAMN13422978	55-Pyelo	Escherichia coli
GCA_014143435.1	JAAMIZ000000000		SAMN13422980	67-Pyelo	Escherichia coli
GCA_014143405.1	JAAMJA000000000		SAMN13422979	57-Pyelo	Escherichia coli
GCA_014143385.1	JAAMIX000000000		SAMN13422984	80-Pyelo	Escherichia coli
GCA_014143335.1	JAAMIW000000000		SAMN13422985	83-Pyelo	Escherichia coli
GCA_014143345.1	JAAMIY000000000		SAMN13422982	75-Pyelo	Escherichia coli
GCA_014143315.1	JAAMIV000000000		SAMN13422986	90-Pyelo	Escherichia coli
GCA_014143305.1	JAAMIU000000000		SAMN13422987	98-Pyelo	Escherichia coli
GCA_014143265.1	JAAMIT000000000		SAMN13422988	9-Pyelo	Escherichia coli
GCA_014143255.1	JAAMIS000000000		SAMN13422989	MVAST0024	Escherichia coli
GCA_014143245.1	JAAMIR000000000		SAMN13422990	MVAST0041	Escherichia coli
GCA_014143225.1	JAAMIQ000000000		SAMN13422991	MVAST0045	Escherichia coli
GCA_014143205.1	JAAMIP000000000		SAMN13422992	MVAST0068	Escherichia coli
GCA_014143175.1	JAAMIN000000000		SAMN13422994	MVAST0093	Escherichia coli
GCA_014143165.1	JAAMIO000000000		SAMN13422993	MVAST0082	Escherichia coli
GCA_014143145.1	JAAMIM000000000		SAMN13422995	MVAST0103	Escherichia coli
GCA_014143125.1	JAAMIK000000000		SAMN13422997	MVAST0106	Escherichia coli
GCA_014143105.1	JAAMIL000000000		SAMN13422996	MVAST0105	Escherichia coli
GCA_014143075.1	JAAMIG000000000		SAMN13423001	MVAST0150	Escherichia coli
GCA_014143065.1	JAAMIJ000000000		SAMN13422998	MVAST0113	Escherichia coli
GCA_014143025.1	JAAMII000000000		SAMN13422999	MVAST0141	Escherichia coli
GCA_014143015.1	JAAMIH000000000		SAMN13423000	MVAST0146	Escherichia coli
GCA_014143005.1	JAAMIF000000000		SAMN13423002	MVAST0163	Escherichia coli
GCA_014142985.1	JAAMIE000000000		SAMN13423003	MVAST0175	Escherichia coli
GCA_014142945.1	JAAMIB000000000		SAMN13423006	MVAST0200	Escherichia coli
GCA_014142935.1	JAAMIA000000000		SAMN13423007	MVAST0243	Escherichia coli
GCA_014142925.1	JAAMIC000000000		SAMN13423005	MVAST0198	Escherichia coli
GCA_014142895.1	JAAMID000000000		SAMN13423004	MVAST0188	Escherichia coli
GCA_014142885.1	JAAMHZ000000000		SAMN13423008	MVAST0255	Escherichia coli
GCA_014142855.1	JAAMHY000000000		SAMN13423009	MVAST0269	Escherichia coli
GCA_014142835.1	JAAMHX000000000		SAMN13423010	MVAST0273	Escherichia coli
GCA_014142825.1	JAAMHW000000000		SAMN13423011	MVAST0289	Escherichia coli
GCA_014142795.1	JAAMHT000000000		SAMN13423014	MVAST0301	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	99
Data volume, Mbytes	44112

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Escherichia coli

Comparative genomics of urinary Escherichia coli isolates associated with different clinical phenotypes

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