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ID: 167
Organism ImageEscherichia coli

A well-studied enteric bacterium

Lineage: Bacteria[4855]; Proteobacteria[1876]; Gammaproteobacteria[795]; Enterobacteriales[161]; Enterobacteriaceae[161]; Escherichia[5]; Escherichia coli[1]
Escherichia coli. This organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E.coli is easily grown in a laboratory setting and is readily amenable to genetic manipulation making it one of the most More...

Sequence data: genome assemblies: 2292; sequence reads: 119 (See  Genome Assembly and Annotation report)
 genome groups: 37 (See  Genome Groups report)

Publications

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 Representative (genome information for reference and representative genomes)

    Reference genomes: [see all organisms]

    • minus sign  Escherichia coli str. K-12 substr. MG1655

      Submitter: Univ. Wisconsin

      Morphology: Gram:Negative, Shape:Bacilli, Motility:Yes

      Environment: OxygenReq:Facultative, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:HostAssociated

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr-NC_000913.3U00096.34.6450.84,1402289674,497184

    • minus sign  Escherichia coli O157:H7 str. Sakai

      Submitter: GIRC

      Human Pathogen

      Morphology: Gram:Negative, Shape:Bacilli, Motility:Yes

      Environment: OxygenReq:Facultative, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:HostAssociated

      Phenotype: Disease:Hemorrhagic colitis

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr-NC_002695.1BA000007.25.550.55,20422105145,36014
      PlsmpOSAK1NC_002127.1AB011548.20.00330643.43---3-
      PlsmpO157NC_002128.1AB011549.20.09272147.685---85-

    • minus sign  Escherichia coli IAI39

      Submitter: Genoscope

      Human Pathogen

      Morphology: Gram:Negative, Shape:Bacilli, Motility:No

      Environment: OxygenReq:Facultative, TemperatureRange:Mesophilic, Habitat:Multiple

      Phenotype: Disease:Urinary tract infection

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr-NC_011750.1CU928164.25.1350.64,7252288975,092160

    • minus sign  Escherichia coli O83:H1 str. NRG 857C

      Submitter: Public Health Agency of Canada Laboratory for Foodborne Zoonoses

      Human Pathogen

      Morphology: Gram:Negative, Shape:Bacilli, Motility:No

      Environment: OxygenReq:Facultative, OptimumTemperature:35, TemperatureRange:Mesophilic, Habitat:Multiple

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Gene Pseudogene
      Chr-NC_017634.1CP001855.14.7550.74,42922844,5361
      PlsmpO83_CORRNC_017659.1CP001856.10.1470650.9153--1541

    • minus sign  Escherichia coli O104:H4 str. 2011C-3493

      Human Pathogen

      Morphology: Gram:Negative, Shape:Bacilli, Endospores:No, Motility:Yes

      Phenotype: Disease:HUS

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Gene Pseudogene
      Chr-NC_018658.1CP003289.15.2750.74,97422945,0922
      PlsmpESBL-EA11NC_018659.1CP003290.10.08854449.794--94-
      PlsmpAA-EA11NC_018666.1CP003291.10.07421747.180--82-
      PlsmpG-EA11NC_018660.1CP003292.10.00154950.81--1-

    • minus sign  Escherichia coli UMN026

      Submitter: Genoscope

      Human Pathogen

      Morphology: Gram:Negative, Shape:Bacilli, Motility:No

      Environment: OxygenReq:Facultative, TemperatureRange:Mesophilic, Habitat:Multiple

      Phenotype: Disease:Urinary tract infection

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr-NC_011751.1CU928163.25.250.74,8192288795,08981
      Plsmp1ESCUMNC_011749.1CU928148.10.12230150.5142--51569
      Plsmp2ESCUMNC_011739.1CU928149.10.03380942.049---49-

Dendrogram (based on genomic BLAST)

Other BioProjects

Genome Sequencing, no data342
Epigenomics21
Other54
Phenotype or Genotype2
Proteome1
Targeted Locus (Loci)1
Transcriptome or Gene expression633
Variation11

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