 
Reference genome, Community selected, Proteomics, Calculated : Escherichia coli str. K-12 substr. MG1655
Escherichia coli strain K-12 substrain MG1655. Non-pathogenic strain MG1655 approximates wild-type E. coli as it has been maintained with very little genetic manipulation except for the curing (removal) of bacteriophage lambda and the F plasmid. MG1655 was derived from strain W1485, which was derived by Joshua Lederberg from the original K-12 isolate obtained from a patient in 1922. Human Pathogen:
no |
Type
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Name
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RefSeq
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INSDC
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Size (Mb)
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GC%
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Protein
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rRNA
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tRNA
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Other RNA
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Gene
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Pseudogene
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| Chr | - | NC_000913.2 | U00096.2 | 4.64 | 50.8 | 4,145 | 22 | 89 | 65 | 4,497 | 181 | |
Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Motility : Yes
- Environment
- OxygenReq : Facultative
- OptimumTemperature : 37
- TemperatureRange : Mesophilic
- Habitat : HostAssociated
-
Reference genome, Community selected : Escherichia coli O157:H7 str. Sakai
Escherichia coli O157:H7. This strain is associated with Hamburger disease, which is caused by the contamination of meat products by enterohemorrhagic E. coli (EHEC). The identifier O157:H7 refers to the serotype of EHEC, and reflects the specific antigenic markers found on the surface of the cell. EHEC attaches and effaces to cells in the large intestine.
There are numerous differences that distinguish O157:H7 from K-12, hundreds of them associated with genomic islands in either strain, including at least 9 large PAIs in O157:H7 that encode virulence factors. A type III secretion system, the locus of enterocyte effacement, numerous toxins and adhesins, as well as fimbrial gene clusters and iron uptake systems are found in these PAIs. Pathogenicity genes are also found on the plasmid pO157.
Escherichia coli O157:H7 strain Sakai. This strain of O157:H7 was isolated in a 1997 outbreak in Sakai, Japan.
Human Pathogen:
yes Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Motility : Yes
- Environment
- OxygenReq : Facultative
- OptimumTemperature : 37
- TemperatureRange : Mesophilic
- Habitat : HostAssociated
- Phenotype
- Disease : Hemorrhagic colitis
-
Reference genome : Escherichia coli IAI39
Escherichia coli IAI39. Escherichia coli IAI39 is a serotype O7:K1 strain from a urinary tract infection and will be used for comparative analysis. Human Pathogen:
yes |
Type
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Name
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RefSeq
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INSDC
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Size (Mb)
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GC%
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Protein
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rRNA
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tRNA
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Other RNA
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Gene
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Pseudogene
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|---|
| Chr | - | NC_011750.1 | CU928164.2 | 5.13 | 50.6 | 4,730 | 22 | 88 | 97 | 5,097 | 160 | |
Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Motility : No
- Environment
- OxygenReq : Facultative
- TemperatureRange : Mesophilic
- Habitat : Multiple
- Phenotype
- Disease : Urinary tract infection
-
Reference genome : Escherichia coli UMN026
Escherichia coli UMN026. Escherichia coli UMN026 is a serotype O7:K1 clinical isolate. This strain is drug resistant and will be used for comparative analysis. Human Pathogen:
yes Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Motility : No
- Environment
- OxygenReq : Facultative
- TemperatureRange : Mesophilic
- Habitat : Multiple
- Phenotype
- Disease : Urinary tract infection
-
Reference genome : Escherichia coli O83:H1 str. NRG 857C
Escherichia coli O83:H1 str. NRG 857C. This strain is associated with Crohn's disease. Human Pathogen:
yes Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Motility : No
- Environment
- OxygenReq : Facultative
- OptimumTemperature : 35
- TemperatureRange : Mesophilic
- Habitat : Multiple
-
Reference genome : Escherichia coli O104:H4 str. 2011C-3493
Isolated from US citizen afflicted with HUS after travel to Germany during the 2011 E coli oubreak. Human Pathogen:
no Biological Properties- Morphology
- Gram : Negative
- Shape : Bacilli
- Endospores : No
- Motility : Yes
- Phenotype
 Chromosomes [62]  Scaffolds or contigs [939]  SRA or Traces [528]  No data [358] |
| Organism | BioProject | Assembly | Status | Chrs | Plasmids | Size (Mb) | GC% | Gene | Protein |
|---|
| Escherichia coli IAI39 | PRJNA59381, PRJNA33411 | ASM2634v1 | | 1 | - | 5.13 | 50.6 | 5,097 | 4,730 | | Escherichia coli O104:H4 str. 2011C-3493 | PRJNA176127, PRJNA81095 | ASM29945v1 | | 1 | 3 | 5.44 | 50.6 | 5,270 | 5,150 | | Escherichia coli O157:H7 str. Sakai | PRJNA57781, PRJNA226 | ASM886v1 | | 1 | 2 | 5.59 | 50.4 | 5,460 | 5,318 | | Escherichia coli O83:H1 str. NRG 857C | PRJNA161987, PRJNA41221 | ASM18334v1 | | 1 | 1 | 4.89 | 50.7 | 4,690 | 4,582 | | Escherichia coli UMN026 | PRJNA62981, PRJNA33415 | ASM2632v1 | | 1 | 2 | 5.36 | 50.6 | 5,298 | 5,014 |
| Epigenomics | 13 | | Other | 10 | | Phenotype or Genotype | 1 | | Proteome | 1 | | RefSeq Other | 3 | | RefSeq Phenotype or Genotype | 1 | | Transcriptome or Gene expression | 393 | | Variation | 9 |
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- Complete nucleotide sequence of pHN7A8, an F33:A-:B-type epidemic plasmid carrying blaCTX-M-65, fosA3 and rmtB from China. He L, et al. J Antimicrob Chemother 2013 Jan
- Characterization of IncN plasmids carrying bla CTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans. Dolejska M, et al. J Antimicrob Chemother 2013 Feb
- Complete sequence of pJIE186-2, a plasmid carrying multiple virulence factors from a sequence type 131 Escherichia coli O25 strain. Zong Z Antimicrob Agents Chemother 2013 Jan
- Plasmid-mediated fosfomycin resistance in Escherichia coli isolated from pig. Ho PL, et al. Vet Microbiol 2013 Mar 23
- Draft Genome Sequence of Escherichia coli Strain LCT-EC59. Li T, et al. Genome Announc 2013 Jan
- Draft Genome Sequence of Uropathogenic Escherichia coli Strain J96. Klein EA, et al. Genome Announc 2013 Jan
- Complete genome sequence of the avian pathogenic Escherichia coli strain APEC O78. Mangiamele P, et al. Genome Announc 2013 Mar 21
- Genome Sequences of Avian Pathogenic Escherichia coli Strains Isolated from Brazilian Commercial Poultry. Rojas TC, et al. Genome Announc 2013 Mar 21
- Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains. Eppinger M, et al. Genome Announc 2013 Feb 28
- Genomic Diversity and Fitness of E. coli Strains Recovered from the Intestinal and Urinary Tracts of Women with Recurrent Urinary Tract Infection. Chen SL, et al. Sci Transl Med 2013 May 8
- DNA sequence analysis of the composite plasmid pTC conferring virulence and antimicrobial resistance for porcine enterotoxigenic Escherichia coli. Fekete PZ, et al. Int J Med Microbiol 2012 Jan
- Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes. Turner PC, et al. J Ind Microbiol Biotechnol 2012 Apr
- Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. Shepard SM, et al. J Bacteriol 2012 Jan
- Complete sequences of plasmids from the hemolytic-uremic syndrome-associated Escherichia coli strain HUSEC41. Künne C, et al. J Bacteriol 2012 Jan
- A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation. Liu B, et al. Nucleic Acids Res 2012 May
- Small plasmids harboring qnrB19: a model for plasmid evolution mediated by site-specific recombination at oriT and Xer sites. Tran T, et al. Antimicrob Agents Chemother 2012 Apr
- Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Grad YH, et al. Proc Natl Acad Sci U S A 2012 Feb 21
- Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage. Kyle JL, et al. J Bacteriol 2012 Apr
- Detection of qnr genes among Escherichia coli isolates of animal origin and complete sequence of the conjugative qnrB19-carrying plasmid pQNR2078. Schink AK, et al. J Antimicrob Chemother 2012 May
- The highly virulent 2006 Norwegian EHEC O103:H25 outbreak strain is related to the 2011 German O104:H4 outbreak strain. L'Abée-Lund TM, et al. PLoS One 2012
- Characterization of extended-spectrum β-lactamase genes found among Escherichia coli isolates from duck and environmental samples obtained on a duck farm. Ma J, et al. Appl Environ Microbiol 2012 May
- pCERC1, a small, globally disseminated plasmid carrying the dfrA14 cassette in the strA gene of the sul2-strA-strB gene cluster. Anantham S, et al. Microb Drug Resist 2012 Aug
- Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. Johnson TJ, et al. Plasmid 2012 Jul
- Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids. Humphrey B, et al. BMC Microbiol 2012 Apr 4
- Identification and characterization of microcin S, a new antibacterial peptide produced by probiotic Escherichia coli G3/10. Zschüttig A, et al. PLoS One 2012
- Phylogenetic incongruence in E. coli O104: understanding the evolutionary relationships of emerging pathogens in the face of homologous recombination. Hao W, et al. PLoS One 2012
- A novel multidrug resistance plasmid isolated from an Escherichia coli strain resistant to aminoglycosides. Sun H, et al. J Antimicrob Chemother 2012 Jul
- Characterization of an IncFII plasmid encoding NDM-1 from Escherichia coli ST131. Bonnin RA, et al. PLoS One 2012
- Transfer of quinolone resistance gene qnrA1 to Escherichia coli through a 50 kb conjugative plasmid resulting from the splitting of a 300 kb plasmid. Garza-Ramos U, et al. J Antimicrob Chemother 2012 Jul
- A plasmid-encoded class 1 integron contains GES-type extended-spectrum β-lactamases in Enterobacteriaceae clinical isolates in Mexico. Barrios H, et al. Antimicrob Agents Chemother 2012 Jul
- A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China. Xiong Y, et al. PLoS One 2012
- Draft genome of a Brazilian avian-pathogenic Escherichia coli strain and in silico characterization of virulence-related genes. Rojas TC, et al. J Bacteriol 2012 Jun
- Draft genome sequences of the diarrheagenic Escherichia coli collection. Hazen TH, et al. J Bacteriol 2012 Jun
- Regional dissemination of a trimethoprim-resistance gene cassette via a successful transposable element. Labar AS, et al. PLoS One 2012
- Genome analysis of bovine-mastitis-associated Escherichia coli O32:H37 strain P4. Blum S, et al. J Bacteriol 2012 Jul
- Genome sequence of Escherichia coli J53, a reference strain for genetic studies. Yi H, et al. J Bacteriol 2012 Jul
- Genome sequence of the hemolytic-uremic syndrome-causing strain Escherichia coli NCCP15647. Jeong H, et al. J Bacteriol 2012 Jul
- Genome sequence of enterohemorrhagic Escherichia coli NCCP15658. Song JY, et al. J Bacteriol 2012 Jul
- Genome sequence of the Shiga toxin-producing Escherichia coli strain NCCP15657. Kim BK, et al. J Bacteriol 2012 Jul
- Characterization of a novel microcin that kills enterohemorrhagic Escherichia coli O157:H7 and O26. Eberhart LJ, et al. Appl Environ Microbiol 2012 Sep
- Finished bacterial genomes from shotgun sequence data. Ribeiro FJ, et al. Genome Res 2012 Nov
- Draft genome sequence of Escherichia coli LCT-EC106. Li T, et al. J Bacteriol 2012 Aug
- Draft genome sequence of Escherichia coli W26, an enteric strain isolated from cow feces. Kim M, et al. J Bacteriol 2012 Sep
- Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing. Ju W, et al. J Clin Microbiol 2012 Dec
- Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2. Ahmed SA, et al. PLoS One 2012
- Draft Genome sequence of Escherichia coli AI27, a porcine isolate belonging to phylogenetic group B1. Lee K, et al. J Bacteriol 2012 Dec
- Genome sequence of multidrug-resistant Escherichia coli EC302/04, isolated from a human tracheal aspirate. Ho WS, et al. J Bacteriol 2012 Dec
- Sequence of pR3521, an IncB plasmid from Escherichia coli encoding ACC-4, SCO-1, and TEM-1 beta-lactamases. Papagiannitsis CC, et al. Antimicrob Agents Chemother 2011 Jan
- Identification of a globally distributed clinical streptomycin-resistance plasmid and other resistance determinants in a coastal bay of China. Zhao J, et al. Lett Appl Microbiol 2011 Jan
- Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue. Krause DO, et al. J Bacteriol 2011 Jan
- A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Sahl JW, et al. Infect Immun 2011 Feb
- Virulence profiling and quantification of verocytotoxin-producing Escherichia coli O145:H28 and O26:H11 isolated during an ice cream-related hemolytic uremic syndrome outbreak. Buvens G, et al. Foodborne Pathog Dis 2011 Mar
- The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. Archer CT, et al. BMC Genomics 2011 Jan 6
- The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30. Fratamico PM, et al. Int J Med Microbiol 2011 Mar
- Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7. Rump LV, et al. J Bacteriol 2011 Apr
- pO157_Sal, a novel conjugative plasmid detected in outbreak isolates of Escherichia coli O157:H7. Wang P, et al. J Clin Microbiol 2011 Apr
- Complete sequencing of the FII plasmid pHK01, encoding CTX-M-14, and molecular analysis of its variants among Escherichia coli from Hong Kong. Ho PL, et al. J Antimicrob Chemother 2011 Apr
- Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir. Eppinger M, et al. Appl Environ Microbiol 2011 May
- Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization. Fabich AJ, et al. Infect Immun 2011 Jun
- Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase from a multidrug-resistant Escherichia coli strain isolated in Hong Kong. Ho PL, et al. PLoS One 2011 Mar 21
- Genome sequence of Escherichia coli AA86, isolated from cow feces. Yi H, et al. J Bacteriol 2011 Jul
- Comparison of sequence reads obtained from three next-generation sequencing platforms. Suzuki S, et al. PLoS One 2011
- Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. Avasthi TS, et al. J Bacteriol 2011 Aug
- Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC). Brzuszkiewicz E, et al. Arch Microbiol 2011 Dec
- Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain. Tan C, et al. J Bacteriol 2011 Sep
- Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing. Poirel L, et al. Antimicrob Agents Chemother 2011 Sep
- Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. Rohde H, et al. N Engl J Med 2011 Aug 25
- Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. Rasko DA, et al. N Engl J Med 2011 Aug 25
- Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. Mellmann A, et al. PLoS One 2011
- Investigation of diversity of plasmids carrying the blaTEM-52 gene. Bielak E, et al. J Antimicrob Chemother 2011 Nov
- Comparative genomics and phylogeny of the IncI1 plasmids: a common plasmid type among porcine enterotoxigenic Escherichia coli. Johnson TJ, et al. Plasmid 2011 Sep
- Comparative genomics of multidrug resistance-encoding IncA/C plasmids from commensal and pathogenic Escherichia coli from multiple animal sources. Fernández-Alarcón C, et al. PLoS One 2011
- Complete sequencing of the bla(NDM-1)-positive IncA/C plasmid from Escherichia coli ST38 isolate suggests a possible origin from plant pathogens. Sekizuka T, et al. PLoS One 2011
- Genome sequence of Escherichia coli XH140A, which produces L-threonine. Yang H, et al. J Bacteriol 2011 Nov
- Rates of mutation and host transmission for an Escherichia coli clone over 3 years. Reeves PR, et al. PLoS One 2011
- Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms. Totsika M, et al. PLoS One 2011
- Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10. Lu S, et al. J Bacteriol 2011 Dec
- Genomic anatomy of Escherichia coli O157:H7 outbreaks. Eppinger M, et al. Proc Natl Acad Sci U S A 2011 Dec 13
- Environmental viscosity does not affect the evolution of cooperation during experimental evolution of colicigenic bacteria. Le Gac M, et al. Evolution 2010 Feb 1
- Complete sequence of pEC14_114, a highly conserved IncFIB/FIIA plasmid associated with uropathogenic Escherichia coli cystitis strains. DebRoy C, et al. Plasmid 2010 Jan
- Multiple antibiotic resistance gene recruitment onto the enterohemorrhagic Escherichia coli virulence plasmid. Venturini C, et al. FASEB J 2010 Apr
- blaCMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids. Call DR, et al. Antimicrob Agents Chemother 2010 Feb
- Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2. Toh H, et al. J Bacteriol 2010 Feb
- Characterization of small ColE-like plasmids mediating widespread dissemination of the qnrB19 gene in commensal enterobacteria. Pallecchi L, et al. Antimicrob Agents Chemother 2010 Feb
- Pyrosequencing of the Vir plasmid of necrotoxigenic Escherichia coli. Johnson TJ, et al. Vet Microbiol 2010 Jul 29
- Derivation of Escherichia coli O157:H7 from its O55:H7 precursor. Zhou Z, et al. PLoS One 2010 Jan 14
- A novel IS26 structure surrounds blaCTX-M genes in different plasmids from German clinical Escherichia coli isolates. Cullik A, et al. J Med Microbiol 2010 May
- Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. Chaudhuri RR, et al. PLoS One 2010 Jan 20
- Sequence analysis and characterization of a transferable hybrid plasmid encoding multidrug resistance and enabling zoonotic potential for extraintestinal Escherichia coli. Johnson TJ, et al. Infect Immun 2010 May
- Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli. Moriel DG, et al. Proc Natl Acad Sci U S A 2010 May 18
- A novel IncQ plasmid type harbouring a class 3 integron from Escherichia coli. Poirel L, et al. J Antimicrob Chemother 2010 Aug
- Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences. Smet A, et al. PLoS One 2010 Jun 18
- A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. Crossman LC, et al. J Bacteriol 2010 Nov
- Non-O157 Shiga toxin-producing Escherichia coli in foods. Mathusa EC, et al. J Food Prot 2010 Sep
- Host imprints on bacterial genomes--rapid, divergent evolution in individual patients. Zdziarski J, et al. PLoS Pathog 2010 Aug 26
- Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes. Nash JH, et al. BMC Genomics 2010 Nov 25
- Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. Iguchi A, et al. J Bacteriol 2009 Jan
- Full sequence and comparative analysis of the plasmid pAPEC-1 of avian pathogenic E. coli chi7122 (O78:K80:H9). Mellata M, et al. PLoS One 2009
- Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Touchon M, et al. PLoS Genet 2009 Jan
- The conserved portion of the putative virulence region contributes to virulence of avian pathogenic Escherichia coli. Tivendale KA, et al. Microbiology 2009 Feb
- The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model. Peigne C, et al. Infect Immun 2009 Jun
- Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. Ferenci T, et al. J Bacteriol 2009 Jun
- Comparative genomics of the IncA/C multidrug resistance plasmid family. Fricke WF, et al. J Bacteriol 2009 Aug
- An outbreak of Escherichia coli O103:H25 - bacteriological investigations and genotyping of isolates from food. Sekse C, et al. Int J Food Microbiol 2009 Aug 15
- Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Kulasekara BR, et al. Infect Immun 2009 Sep
- Genetic context of plasmid-carried blaCMY-2-like genes in Enterobacteriaceae. Verdet C, et al. Antimicrob Agents Chemother 2009 Sep
- Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone. Woodford N, et al. Antimicrob Agents Chemother 2009 Oct
- Conjugative plasmid transfer and adhesion dynamics in an Escherichia coli biofilm. Ong CL, et al. Appl Environ Microbiol 2009 Nov
- Nucleotide sequence analysis of the enterotoxigenic Escherichia coli Ent plasmid. Ochi S, et al. DNA Res 2009 Oct
- Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). Jeong H, et al. J Mol Biol 2009 Dec 11
- ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Maccallum I, et al. Genome Biol 2009
- Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Ogura Y, et al. Proc Natl Acad Sci U S A 2009 Oct 20
- The contribution of small cryptic plasmids to the antibiotic resistance of enteropathogenic Escherichia coli E2348/69. Handford CL, et al. Can J Microbiol 2009 Nov
- Escherichia coli isolated from a Crohn's disease patient adheres, invades, and induces inflammatory responses in polarized intestinal epithelial cells. Eaves-Pyles T, et al. Int J Med Microbiol 2008 Jul
- Complete sequence of low-copy-number plasmid MccC7-H22 of probiotic Escherichia coli H22 and the prevalence of mcc genes among human E. coli. Smajs D, et al. Plasmid 2008 Jan
- The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. Durfee T, et al. J Bacteriol 2008 Apr
- The effects of low-shear stress on Adherent-invasive Escherichia coli. Allen CA, et al. Environ Microbiol 2008 Jun
- Outbreak of haemolytic uraemic syndrome in Norway caused by stx2-positive Escherichia coli O103:H25 traced to cured mutton sausages. Schimmer B, et al. BMC Infect Dis 2008 Apr 3
- Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Norman A, et al. Plasmid 2008 Jul
- Outbreak of verocytotoxin-producing E. coli O145 and O26 infections associated with the consumption of ice cream produced at a farm, Belgium, 2007. De Schrijver K, et al. Euro Surveill 2008 Feb 14
- Characterization of a 3.3-kb plasmid of Escherichia coli O157:H7 and evaluation of stability of genetically engineered derivatives of this plasmid expressing green fluorescence. Sharma VK, et al. Vet Microbiol 2008 Dec 10
- The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. Rasko DA, et al. J Bacteriol 2008 Oct
- Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. Fricke WF, et al. J Bacteriol 2008 Oct
- Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult. Oshima K, et al. DNA Res 2008 Dec
- Sequence analysis of the plasmid pColG from the Escherichia coli strain CA46. Avgustin JA, et al. Plasmid 2007 Jan
- Prevalence of ColE1-like plasmids and colicin K production among uropathogenic Escherichia coli strains and quantification of inhibitory activity of colicin K. Rijavec M, et al. Appl Environ Microbiol 2007 Feb
- Mosaic structure of p1658/97, a 125-kilobase plasmid harboring an active amplicon with the extended-spectrum beta-lactamase gene blaSHV-5. Zienkiewicz M, et al. Antimicrob Agents Chemother 2007 Apr
- The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. Johnson TJ, et al. J Bacteriol 2007 Apr
- Community emergence of CTX-M type extended-spectrum beta-lactamases among urinary Escherichia coli from women. Ho PL, et al. J Antimicrob Chemother 2007 Jul
- Escherichia coli K1-specific bacteriophage CUS-3 distribution and function in phase-variable capsular polysialic acid O acetylation. King MR, et al. J Bacteriol 2007 Sep
- Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium. Bergholz TM, et al. BMC Microbiol 2007 Oct 29
- Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res 2006
- Exoproducts of the Escherichia coli strain H22 inhibiting some enteric pathogens both in vitro and in vivo. Cursino L, et al. J Appl Microbiol 2006 Apr
- Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Chen SL, et al. Proc Natl Acad Sci U S A 2006 Apr 11
- The analysis of cell division and cell wall synthesis genes reveals mutationally inactivated ftsQ and mraY in a protoplast-type L-form of Escherichia coli. Siddiqui RA, et al. FEMS Microbiol Lett 2006 May
- Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol 2006
- Facile recovery of individual high-molecular-weight, low-copy-number natural plasmids for genomic sequencing. Williams LE, et al. Appl Environ Microbiol 2006 Jul
- Identification and characterization of Escherichia coli RS218-derived islands in the pathogenesis of E. coli meningitis. Xie Y, et al. J Infect Dis 2006 Aug 1
- The complete sequence and segregational stability analysis of a new cryptic plasmid pIGWZ12 from a clinical strain of Escherichia coli. Zaleski P, et al. Plasmid 2006 Nov
- Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Hochhut B, et al. Mol Microbiol 2006 Aug
- Complete DNA sequence of a ColBM plasmid from avian pathogenic Escherichia coli suggests that it evolved from closely related ColV virulence plasmids. Johnson TJ, et al. J Bacteriol 2006 Aug
- Complete sequence of the large virulence plasmid pSFO157 of the sorbitol-fermenting enterohemorrhagic Escherichia coli O157:H- strain 3072/96. Brunder W, et al. Int J Med Microbiol 2006 Nov
- Nucleotide sequence analysis of the enteropathogenic Escherichia coli adherence factor plasmid pMAR7. Brinkley C, et al. Infect Immun 2006 Sep
- Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates. Johnson TJ, et al. Antimicrob Agents Chemother 2006 Nov
- Acquisition of avian pathogenic Escherichia coli plasmids by a commensal E. coli isolate enhances its abilities to kill chicken embryos, grow in human urine, and colonize the murine kidney. Skyberg JA, et al. Infect Immun 2006 Nov
- Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Teng CH, et al. Infect Immun 2006 Oct
- Escherichia coli K1 RS218 interacts with human brain microvascular endothelial cells via type 1 fimbria bacteria in the fimbriated state. Teng CH, et al. Infect Immun 2005 May
- Cryptic plasmid pRK2 from Escherichia coli W: sequence analysis and segregational stability. Stepánek V, et al. Plasmid 2005 Jul
- armA and aminoglycoside resistance in Escherichia coli. González-Zorn B, et al. Emerg Infect Dis 2005 Jun
- Genetic basis for dissemination of armA. González-Zorn B, et al. J Antimicrob Chemother 2005 Sep
- DNA sequencing by indexer walking. Gromek K, et al. Clin Chem 2005 Sep
- The pCoo plasmid of enterotoxigenic Escherichia coli is a mosaic cointegrate. Froehlich B, et al. J Bacteriol 2005 Sep
- DNA sequence and comparative genomics of pAPEC-O2-R, an avian pathogenic Escherichia coli transmissible R plasmid. Johnson TJ, et al. Antimicrob Agents Chemother 2005 Nov
- Enhancement of host fitness by the sul2-coding plasmid p9123 in the absence of selective pressure. Enne VI, et al. J Antimicrob Chemother 2004 Jun
- Instability of pathogenicity islands in uropathogenic Escherichia coli 536. Middendorf B, et al. J Bacteriol 2004 May
- Plasmid-encoded multidrug efflux pump conferring resistance to olaquindox in Escherichia coli. Hansen LH, et al. Antimicrob Agents Chemother 2004 Sep
- The pathogenicity island-associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536. Schneider G, et al. Infect Immun 2004 Oct
- Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada. Boyd DA, et al. Antimicrob Agents Chemother 2004 Oct
- Hexamerization of RepA from the Escherichia coli plasmid pKL1. Burian J, et al. Biochemistry 2003 Sep 2
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