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Report for CCDS12756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12756.1 Public Homo sapiens 19 SNRNP70 24 110 108 CCDS HistoryNCBI Gene:6625Re-query CCDS DB by CCDS ID:12756.1Re-query CCDS DB by GeneID:6625See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000598441.6 ENSP00000472998.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000598441.6Link to Ensembl Protein Viewer:ENSP00000472998.1Re-query CCDS DB by Nucleotide ID:ENST00000598441Re-query CCDS DB by Protein ID:ENSP00000472998
Original member Current member NCBI NM_003089.6 NP_003080.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003089.6Link to Protein Sequence:NP_003080.2Re-query CCDS DB by Nucleotide ID:NM_003089Re-query CCDS DB by Protein ID:NP_003080Link to BLAST:NP_003080.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003080.2 437 P08621-1 437 100% 0 0

Chromosomal Locations for CCDS 12756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49086415 49086561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49090291 49090353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49090466 49090520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49098427 49098491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49098642 49098704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49101390 49101471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49104634 49104735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49107625 49107712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49107795 49108443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGACCCAGTTCCTGCCGCCCAACCTTCTGGCCCTCTTTGCCCCCCGTGACCCTATTCCATACCTGCCAC
CCCTGGAGAAACTGCCACATGAAAAACACCACAATCAACCTTATTGTGGCATTGCGCCGTACATTCGAGA
GTTTGAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAA
AGACGGGAAAAGATTGAGCGGCGACAGCAAGAAGTGGAGACAGAGCTTAAAATGTGGGACCCTCACAATG
ATCCCAATGCTCAGGGGGATGCCTTCAAGACTCTCTTCGTGGCGAGAGTGAATTATGACACAACAGAATC
CAAGCTCCGGAGAGAGTTTGAGGTGTACGGACCTATCAAAAGAATACACATGGTCTACAGTAAGCGGTCA
GGAAAGCCCCGTGGCTATGCCTTCATCGAGTACGAACACGAGCGAGACATGCACTCCGCTTACAAACACG
CAGATGGCAAGAAGATTGATGGCAGGAGGGTCCTTGTGGACGTGGAGAGGGGCCGAACCGTGAAGGGCTG
GAGGCCCCGGCGGCTAGGAGGAGGCCTCGGTGGTACCAGAAGAGGAGGGGCTGATGTGAACATCCGGCAT
TCAGGCCGCGATGACACCTCCCGCTACGATGAGAGGCCCGGCCCCTCCCCGCTTCCGCACAGGGACCGGG
ACCGGGACCGTGAGCGGGAGCGCAGAGAGCGGAGCCGGGAGCGAGACAAGGAGCGAGAACGGCGACGCTC
CCGCTCCCGGGACCGGCGGAGGCGCTCACGGAGTCGCGACAAGGAGGAGCGGAGGCGCTCCAGGGAGCGG
AGCAAGGACAAGGACCGGGACCGGAAGCGGCGAAGCAGCCGGAGTCGGGAGCGGGCCCGGCGGGAGCGGG
AGCGCAAGGAGGAGCTGCGTGGCGGCGGTGGCGACATGGCGGAGCCCTCCGAGGCGGGTGACGCGCCCCC
TGATGATGGGCCTCCAGGGGAGCTCGGGCCTGACGGCCCTGACGGTCCAGAGGAAAAGGGCCGGGATCGT
GACCGGGAGCGACGGCGGAGCCACCGGAGCGAGCGCGAGCGGCGCCGGGACCGGGATCGTGACCGTGACC
GTGACCGCGAGCACAAACGGGGGGAGCGGGGCAGTGAGCGGGGCAGGGATGAGGCCCGAGGTGGGGGCGG
TGGCCAGGACAACGGGCTGGAGGGTCTGGGCAACGACAGCCGAGACATGTACATGGAGTCTGAGGGCGGC
GACGGCTACCTGGCTCCGGAGAATGGGTATTTGATGGAGGCTGCGCCGGAGTGA

Translation (437 aa):
MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK
RREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS
GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH
SGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRER
SKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDR
DRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
DGYLAPENGYLMEAAPE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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