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Report for CCDS12249.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12249.1 Public Homo sapiens 19 TMED1 3 36.2 41 CCDS HistoryNCBI Gene:11018Re-query CCDS DB by CCDS ID:12249.1Re-query CCDS DB by GeneID:11018

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 12249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000214869 ENSP00000214869 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000214869Link to Ensembl Protein Viewer:ENSP00000214869Re-query CCDS DB by Nucleotide ID:ENST00000214869Re-query CCDS DB by Protein ID:ENSP00000214869
Original member NCBI NM_006858.2 NP_006849.1 Accepted not alive Link to Nucleotide Sequence:NM_006858.2Link to Protein Sequence:NP_006849.1Re-query CCDS DB by Nucleotide ID:NM_006858Re-query CCDS DB by Protein ID:NP_006849Link to BLAST:NP_006849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006849.1 227 Q13445 227 100% 0 0

Chromosomal Locations for CCDS 12249.1

Assembly NCBI36 (GCF_000001405.12)

On '-' strand of Chromosome 19 (NC_000019.8)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

Chromosome Start Stop Links
19 10804671 10804889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10806610 10806793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10806932 10807029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10807685 10807867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGATGGCGGCCGGCGCGGCCCTAGCCCTGGCCTTGTGGCTACTAATGCCACCAGTGGAGGTGGGAGGGG
CGGGGCCCCCGCCAATCCAGGACGGTGAGTTCACGTTCCTGTTGCCGGCGGGGAGGAAGCAGTGTTTCTA
CCAGTCCGCGCCGGCCAACGCAAGCCTCGAGACCGAATACCAGGTGATCGGAGGTGCTGGACTGGACGTG
GACTTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACA
CGGTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAA
GCTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCT
GTGGAGCCCGAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCC
GGCTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGA
GGGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTG
CAGGTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAG

Translation (227 aa):
MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDV
DFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEA
VEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVL
QVCTLKRFFQDKRPVPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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