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Report for CCDS6161.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6161.1 Public Homo sapiens 8 TMEM68 12 104 71 CCDS HistoryNCBI Gene:137695Re-query CCDS DB by CCDS ID:6161.1Re-query CCDS DB by GeneID:137695

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 6161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000334667 ENSP00000335416 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000334667Link to Ensembl Protein Viewer:ENSP00000335416Re-query CCDS DB by Nucleotide ID:ENST00000334667Re-query CCDS DB by Protein ID:ENSP00000335416
Original member Current member EBI OTTHUMT00000378138 OTTHUMP00000226378 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000378138Link to Vega Protein Viewer:OTTHUMP00000226378Re-query CCDS DB by Nucleotide ID:OTTHUMT00000378138Re-query CCDS DB by Protein ID:OTTHUMP00000226378
Original member NCBI NM_152417.1 NP_689630.1 Accepted not alive Link to Nucleotide Sequence:NM_152417.1Link to Protein Sequence:NP_689630.1Re-query CCDS DB by Nucleotide ID:NM_152417Re-query CCDS DB by Protein ID:NP_689630Link to BLAST:NP_689630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689630.1 257 Q96MH6-2 257 100% 0 0

Chromosomal Locations for CCDS 6161.1

Assembly GRCh37.p10 (GCF_000001405.22)

On '-' strand of Chromosome 8 (NC_000008.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8

Chromosome Start Stop Links
8 56652691 56652777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 56663523 56663716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 56668803 56668970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 56675194 56675518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGATAGACAAAAATCAAACCTGTGGTGTAGGACAGGATTCTGTGCCCTATATGATTTGTCTGATTCACA
TACTCGAAGAATGGTTTGGTGTGGAGCAGTTGGAGGACTATTTGAATTTTGCAAACTATCTCTTGTGGGT
TTTTACACCACTAATACTTTTAATACTTCCTTACTTTACTATCTTTCTTCTCTACCTTACTATTATTTTC
TTACACATTTATAAGAGAAAGAATGTATTGAAAGAAGCCTACTCTCATAATTTATGGGATGGTGCAAGGA
AAACAGTGGCAACTCTGTGGGATGGACATGCAGCCGTTTGGCATGGTTATGAAGTTCATGGAATGGAAAA
AATACCAGAAGATGGACCAGCACTTATAATTTTTTATCATGGAGCTATTCCTATAGATTTTTACTATTTC
ATGGCTAAAATATTTATACACAAAGGCAGAACTTGCCGAGTAGTAGCTGATCACTTTGTCTTTAAAATTC
CAGGGTTTAGTTTATTACTGGATGTGTTTTGTGCTCTACATGGACCAAGAGAAAAATGTGTTGAAATTCT
GAGGAGTGGCCACTTGTTAGCTATCTCACCAGGTGGAGTTCGAGAAGCCCTAATTAGTGATGAAACTTAT
AACATCGTATGGGGTCATCGCAGAGGCTTTGCTCAGGTTGCAATTGATGCAAAAGTGACGAAGAATGCTG
TTCAAGCTTTGATTGATAAGCACCAAAGAATACCAGGAAACATTATGAGTGCTTTGTTAGAACGTTTTCA
TTGA

Translation (257 aa):
MIDKNQTCGVGQDSVPYMICLIHILEEWFGVEQLEDYLNFANYLLWVFTPLILLILPYFTIFLLYLTIIF
LHIYKRKNVLKEAYSHNLWDGARKTVATLWDGHAAVWHGYEVHGMEKIPEDGPALIIFYHGAIPIDFYYF
MAKIFIHKGRTCRVVADHFVFKIPGFSLLLDVFCALHGPREKCVEILRSGHLLAISPGGVREALISDETY
NIVWGHRRGFAQVAIDAKVTKNAVQALIDKHQRIPGNIMSALLERFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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