NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9416.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9416.2 Public Homo sapiens 13 CAB39L 24 110 108 CCDS HistoryNCBI Gene:81617Re-query CCDS DB by CCDS ID:9416.2Re-query CCDS DB by GeneID:81617See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9416.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347776.9 ENSP00000261669.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347776.9Link to Ensembl Protein Viewer:ENSP00000261669.7Re-query CCDS DB by Nucleotide ID:ENST00000347776Re-query CCDS DB by Protein ID:ENSP00000261669
Original member Current member EBI ENST00000355854.8 ENSP00000348113.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355854.8Link to Ensembl Protein Viewer:ENSP00000348113.4Re-query CCDS DB by Nucleotide ID:ENST00000355854Re-query CCDS DB by Protein ID:ENSP00000348113
Original member Current member EBI ENST00000410043.5 ENSP00000386328.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410043.5Link to Ensembl Protein Viewer:ENSP00000386328.1Re-query CCDS DB by Nucleotide ID:ENST00000410043Re-query CCDS DB by Protein ID:ENSP00000386328
Original member Current member EBI ENST00000409308.6 ENSP00000386375.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409308.6Link to Ensembl Protein Viewer:ENSP00000386375.1Re-query CCDS DB by Nucleotide ID:ENST00000409308Re-query CCDS DB by Protein ID:ENSP00000386375
Original member Current member EBI ENST00000610540.4 ENSP00000479669.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610540.4Link to Ensembl Protein Viewer:ENSP00000479669.1Re-query CCDS DB by Nucleotide ID:ENST00000610540Re-query CCDS DB by Protein ID:ENSP00000479669
Original member Current member NCBI NM_001079670.3 NP_001073138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079670.3Link to Protein Sequence:NP_001073138.1Re-query CCDS DB by Nucleotide ID:NM_001079670Re-query CCDS DB by Protein ID:NP_001073138Link to BLAST:NP_001073138.1
Original member Current member NCBI NM_001287337.2 NP_001274266.1 Accepted alive Link to Nucleotide Sequence:NM_001287337.2Link to Protein Sequence:NP_001274266.1Re-query CCDS DB by Nucleotide ID:NM_001287337Re-query CCDS DB by Protein ID:NP_001274266Link to BLAST:NP_001274266.1
Original member Current member NCBI NM_001287338.2 NP_001274267.1 Accepted alive Link to Nucleotide Sequence:NM_001287338.2Link to Protein Sequence:NP_001274267.1Re-query CCDS DB by Nucleotide ID:NM_001287338Re-query CCDS DB by Protein ID:NP_001274267Link to BLAST:NP_001274267.1
Original member Current member NCBI NM_001287339.2 NP_001274268.1 Accepted alive Link to Nucleotide Sequence:NM_001287339.2Link to Protein Sequence:NP_001274268.1Re-query CCDS DB by Nucleotide ID:NM_001287339Re-query CCDS DB by Protein ID:NP_001274268Link to BLAST:NP_001274268.1
Original member Current member NCBI NM_030925.4 NP_112187.2 Accepted alive Link to Nucleotide Sequence:NM_030925.4Link to Protein Sequence:NP_112187.2Re-query CCDS DB by Nucleotide ID:NM_030925Re-query CCDS DB by Protein ID:NP_112187Link to BLAST:NP_112187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073138.1 337 Q9H9S4 337 100% 0 0
NP_001274266.1 337 Q9H9S4 337 100% 0 0
NP_001274267.1 337 Q9H9S4 337 100% 0 0
NP_001274268.1 337 Q9H9S4 337 100% 0 0
NP_112187.2 337 Q9H9S4 337 100% 0 0

Chromosomal Locations for CCDS 9416.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49310814 49310993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49331947 49332090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49339677 49339742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49344179 49344238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49350744 49350912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49359714 49359832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49376967 49377131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49382800 49382910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGAAAAAAATGCCTTTGTTTAGTAAATCACACAAAAATCCAGCAGAAATTGTGAAAATCCTGAAAGACA
ATTTGGCCATTTTGGAAAAGCAAGACAAAAAGACAGACAAGGCTTCAGAAGAAGTGTCTAAATCACTGCA
AGCAATGAAAGAAATTCTGTGTGGTACAAACGAGAAAGAACCCCCAACAGAAGCAGTGGCTCAGCTAGCA
CAAGAACTCTACAGCAGTGGCCTGCTAGTGACACTGATAGCTGACCTGCAGCTGATAGACTTTGAGGGAA
AAAAAGATGTGACCCAGATATTTAACAACATCTTGAGAAGACAGATAGGCACTCGGAGTCCTACTGTGGA
GTATATTAGTGCTCATCCTCATATCCTGTTTATGCTCCTCAAAGGATATGAAGCCCCACAGATTGCCTTA
CGTTGTGGGATTATGCTGAGAGAATGTATTCGACATGAACCACTTGCCAAAATCATCCTCTTTTCTAATC
AATTCAGAGATTTCTTTAAGTACGTGGAGTTGTCAACATTTGATATTGCTTCAGATGCCTTTGCTACTTT
CAAGGATTTACTAACCAGACATAAAGTGTTGGTAGCAGACTTCTTAGAACAAAATTACGACACTATTTTT
GAAGACTATGAGAAATTGCTTCAGTCTGAGAATTATGTTACTAAGAGACAGTCTTTAAAGCTGCTAGGGG
AGCTGATCCTGGACCGTCACAACTTTGCCATCATGACAAAGTATATCAGCAAGCCGGAGAACCTGAAACT
CATGATGAACCTCCTTCGGGATAAAAGTCCCAACATCCAGTTTGAAGCCTTTCATGTTTTTAAGGTGTTT
GTGGCCAGTCCTCACAAAACACAGCCTATTGTGGAGATCCTGTTAAAAAATCAGCCCAAACTCATTGAGT
TTCTGAGCAGCTTCCAAAAAGAAAGGACGGATGATGAGCAGTTCGCTGACGAGAAGAACTACTTGATTAA
ACAGATCCGAGACTTGAAGAAAACGGCCCCTTGA

Translation (337 aa):
MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLA
QELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIAL
RCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIF
EDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVF
VASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH