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CAB39L calcium binding protein 39 like [ Homo sapiens (human) ]

Gene ID: 81617, updated on 1-Jun-2020

Summary

Official Symbol
CAB39Lprovided by HGNC
Official Full Name
calcium binding protein 39 likeprovided by HGNC
Primary source
HGNC:HGNC:20290
See related
Ensembl:ENSG00000102547 MIM:612175
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MO2L; MO25-BETA; bA103J18.3
Expression
Broad expression in prostate (RPKM 17.8), adrenal (RPKM 15.4) and 23 other tissues See more
Orthologs

Genomic context

See CAB39L in Genome Data Viewer
Location:
13q14.2
Exon count:
16
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (49308650..49444851, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (49882786..50018221, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene cytidine and dCMP deaminase domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 13963 Neighboring gene SETDB2-PHF11 readthrough Neighboring gene SET domain bifurcated histone lysine methyltransferase 2 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 14 Neighboring gene PHD finger protein 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12577

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein serine/threonine kinase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell cycle arrest TAS
Traceable Author Statement
more info
 
intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
calcium-binding protein 39-like
Names
MO25beta
U937-associated antigen
antigen MLAA-34
mo25-like protein
sarcoma antigen NY-SAR-79

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079670.3NP_001073138.1  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_001073138.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a 5' non-coding exon compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AL138875, AW134845, BC010993, BX647518, DB051338
    Consensus CDS
    CCDS9416.2
    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Related
    ENSP00000386375.1, ENST00000409308.6
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  2. NM_001287337.2NP_001274266.1  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_001274266.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-5 encode the same protein.
    Source sequence(s)
    AL138875, AW134845, AY211923, AY288977, BX647518, DB051338
    Consensus CDS
    CCDS9416.2
    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3, Q86WE6
    Related
    ENSP00000386328.1, ENST00000410043.5
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  3. NM_001287338.1NP_001274267.1  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_001274267.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains 3 alternate 5' non-coding exons compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AL138875, AW134845, AY211923, BX647518, DB033467, DB457246, HY043965
    Consensus CDS
    CCDS9416.2
    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3, Q86WE6
    Related
    ENSP00000479669.1, ENST00000610540.4
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  4. NM_001287339.1NP_001274268.1  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_001274268.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks couple of exons, and contains two alternate exons in the 5' non-coding region compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AL138875, AW134845, AY211923, BX647518, DB457246
    Consensus CDS
    CCDS9416.2
    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3, Q86WE6
    Related
    ENSP00000261669.7, ENST00000347776.9
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  5. NM_030925.4NP_112187.2  calcium-binding protein 39-like

    See identical proteins and their annotated locations for NP_112187.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks several exons, and contains an alternate exon in the 5' non-coding region compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AL136218, AL138875, AW134845, AY211923, BC010993, BX647518, DB279812
    Consensus CDS
    CCDS9416.2
    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3, Q86WE6
    Related
    ENSP00000348113.4, ENST00000355854.8
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    49308650..49444851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011535256.3XP_011533558.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_011533558.1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  2. XM_017020786.2XP_016876275.1  calcium-binding protein 39-like isoform X1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  3. XM_011535254.3XP_011533556.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_011533556.1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  4. XM_017020788.2XP_016876277.1  calcium-binding protein 39-like isoform X1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  5. XM_017020787.2XP_016876276.1  calcium-binding protein 39-like isoform X1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  6. XM_017020785.2XP_016876274.1  calcium-binding protein 39-like isoform X1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
  7. XM_011535255.3XP_011533557.1  calcium-binding protein 39-like isoform X1

    See identical proteins and their annotated locations for XP_011533557.1

    UniProtKB/Swiss-Prot
    Q9H9S4
    UniProtKB/TrEMBL
    A0A024RDT3
    Conserved Domains (1) summary
    pfam08569
    Location:61324
    Mo25; Mo25-like
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