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Report for CCDS47449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47449.1 Public Homo sapiens 6 RIMS1 24 110 108 CCDS HistoryNCBI Gene:22999Re-query CCDS DB by CCDS ID:47449.1Re-query CCDS DB by GeneID:22999See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521978.6 ENSP00000428417.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000521978.6Link to Ensembl Protein Viewer:ENSP00000428417.1Re-query CCDS DB by Nucleotide ID:ENST00000521978Re-query CCDS DB by Protein ID:ENSP00000428417
Original member Current member NCBI NM_014989.7 NP_055804.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014989.7Link to Protein Sequence:NP_055804.2Re-query CCDS DB by Nucleotide ID:NM_014989Re-query CCDS DB by Protein ID:NP_055804Link to BLAST:NP_055804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055804.2 1692 Q86UR5-1 1692 100% 0 0

Chromosomal Locations for CCDS 47449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71887024 71887187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71968983 71969063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72096949 72097162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72099975 72099986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72179575 72179915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72182284 72183149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72233773 72233840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72235618 72235728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72237823 72237922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72242314 72242437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72245815 72245861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72248015 72248127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72250330 72250460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72250921 72251092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72251215 72251368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72252761 72252832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72258125 72258281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72258986 72259111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72260705 72260767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72264975 72265052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72265390 72265503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72265960 72266049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72274349 72274432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72284047 72284118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72290679 72290861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72291934 72292046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72307258 72307370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72313506 72313672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72333600 72333835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72390598 72390736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72392698 72392810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72398249 72398350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72398955 72399094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72400496 72400714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5079 nt):
ATGTCCTCGGCCGTGGGGCCCCGCGGTCCTCGCCCACCCACGGTGCCTCCCCCCATGCAAGAGCTGCCCG
ACCTGAGCCACCTGACCGAAGAGGAGAGGAACATTATCATGGCAGTGATGGACCGGCAGAAGGAAGAGGA
GGAAAAAGAAGAAGCCATGCTCAAGTGTGTTGTCAGGGACATGGCGAAGCCTGCTGCCTGCAAAACACCA
AGAAATGCTGAAAACCAGCCCCACCAACCTTCACCGAGATTGCATCAACAGTTTGAAAGCTATAAGGAAC
AAGTGAGAAAAATAGGGGAAGAAGCGCGGCGTTACCAGGGCGAGCACAAAGACGATGCTCCGACTTGTGG
AATCTGTCATAAAACAAAGTTTGCTGATGGGTGCGGTCATCTCTGCTCCTATTGTCGCACTAAGTTCTGT
GCGCGCTGCGGAGGCCGCGTGTCTCTACGGTCAAACAACGAGGACAAAGTGGTTATGTGGGTATGCAATT
TATGTCGAAAGCAACAAGAAATCTTAACCAAATCTGGGGCATGGTTCTTTGGAAGTGGCCCTCAGCAGAC
AAGTCAGGATGGAACCCTGAGTGATACAGCTACAGGTGCTGGCTCTGAGGTACCAAGAGAAAAGAAAGCA
CGACTCCAAGAGCGATCGCGGTCTCAGACACCCCTAAGCACAGCAGCTGCCTCCTCCCAGGATGCTGCTC
CTCCCAGCGCACCACCAGACAGGAGCAAAGGGGCTGAGCCCTCGCAGCAAGCCTTGGGGCCTGAACAGAA
GCAGGCTTCATCCAGGTCTAGAAGTGAACCTCCTAGAGAGAGAAAGAAGACCCCAGGGCTTTCCGAGCAG
AATGGCAAAGGAGCCCTGAAGAGCGAGCGGAAACGCGTGCCAAAGACCTCAGCGCAGCCCGTGGAGGGGG
CCGTCGAAGAACGGGAGCGCAAAGAAAGGCGGGAAAGCCGAAGGCTTGAGAAAGGGCGATCACAGGATTA
CCCAGACACGCCGGAAAAACGGGATGAGGGCAAAGCGGCGGATGAGGAAAAGCAAAGAAAAGAGGAGGAT
TATCAGACCAGGTACCGCAGCGACCCGAACCTAGCTCGGTACCCGGTGAAACCGCCGCCTGAGGAGCAGC
AGATGCGCATGCACGCCCGGGTGTCCCGCGCCAGGCACGAGCGGCGCCACAGCGACGTGGCGCTCCCGCG
CACCGAGGCGGGCGCGGCGCTGCCGGAGGGCAAGGCCGGCAAACGCGCGCCGGCGGCAGCCAGGGCCTCG
CCGCCGGACTCGCCGCGGGCTTACTCGGCTGAGAGAACTGCGGAGACCAGGGCGCCGGGCGCCAAGCAGC
TAACGAACCACAGCCCGCCGGCGCCCAGACATGGGCCGGTTCCCGCAGAAGCCCCGGAGCTCAAAGCCCA
GGAGCCCCTCAGGAAGCAGAGCCGCCTGGACCCCAGCTCGGCGGTCCTCATGCGGAAGGCCAAGCGCGAG
AAGGTGGAGACCATGCTGCGGAACGACTCTTTGAGCTCAGACCAGTCCGAGTCGGTGCGGCCGTCCCCGC
CCAAGCCGCACCGGTCCAAGAGAGGCGGCAAGAAGCGGCAGATGTCGGTGAGCAGCTCTGAGGAGGAGGG
CGTGTCGACGCCCGAGTACACCAGCTGCGAGGACGTGGAGCTGGAGAGCGAGAGCGTCAGCGAGAAAGGT
GATTTGGATTATTACTGGTTGGATCCTGCCACGTGGCACAGCCGGGAGACATCACCTATTAGTTCGCATC
CTGTAACGTGGCAACCATCTAAAGAGGGGGACCGATTAATTGGACGTGTTATTCTTAACAAGAGAACAAC
CATGCCCAAAGACTCAGGTGCATTGCTGGGTCTGAAAGTTGTTGGAGGAAAAATGACTGACTTAGGACGA
CTTGGTGCTTTCATCACCAAAGTAAAGAAGGGTAGCCTAGCAGATGTAGTTGGACACCTAAGAGCAGGGG
ATGAAGTTCTAGAATGGAATGGTAAACCCCTGCCGGGAGCTACAAATGAAGAAGTTTACAACATTATTTT
AGAATCAAAATCAGAACCTCAAGTTGAAATTATTGTTTCAAGGCCTATTGGTGACATTCCCCGGATTCCT
GAGAGCTCCCACCCTCCACTGGAGTCCAGTTCAAGTTCCTTTGAATCTCAGAAGATGGAAAGGCCTTCCA
TTTCTGTTATTTCTCCAACAAGTCCTGGAGCTCTAAAAGATGCCCCACAAGTCTTACCAGGGCAACTTTC
TGTGAAGTTGTGGTATGATAAAGTGGGACACCAGCTGATTGTAAATGTTCTGCAAGCAACAGATCTACCT
GCTAGAGTAGATGGACGTCCTCGAAATCCCTATGTAAAAATGTATTTTCTTCCAGATAGAAGTGATAAAA
GTAAAAGGAGGACCAAAACAGTAAAGAAAATACTAGAACCAAAATGGAATCAAACTTTTGTCTATTCACA
TGTACATCGTAGAGATTTTAGAGAACGAATGTTAGAAATAACTGTGTGGGACCAACCAAGAGTGCAAGAA
GAAGAAAGTGAATTTCTTGGAGAGATCCTCATAGAATTGGAGACAGCGCTTTTAGATGATGAACCGCATT
GGTATAAACTTCAGACACATGATGAGTCTTCACTACCTCTGCCTCAGCCATCACCTTTCATGCCAAGGCG
ACATATTCATGGAGAAAGCTCTAGCAAAAAGCTACAAAGATCTCAGCGAATCAGTGATAGTGACATCTCA
GATTATGAGGTTGATGATGGTATTGGCGTAGTTCCTCCAGTAGGCTATAGGTCTAGTGCTAGAGAAAGTA
AATCTACAACATTAACTGTGCCAGAACAGCAAAGAACAACTCATCACCGCTCACGTTCAGTATCTCCTCA
TCGCGGCAATGATCAGGGAAAGCCGCGTTCACGTTTACCAAATGTGCCATTACAGAGGAGTTTAGATGAA
ATTCATCCAACAAGAAGGTCACGTTCTCCAACCAGACACCATGATGCCTCCCGAAGTCCAGTTGATCATA
GAACCAGAGATGTGGATAGTCAGTATTTATCAGAACAAGACAGTGAGCTTCTTATGCTGCCCAGAGCAAA
ACGAGGACGAAGTGCAGAATGCCTACATACTACCAGACATCTTGTTAGGCACTATAAAACATTACCTCCC
AAGATGCCTTTATTACAGAGCAGTTCTCACTGGAATATTTACAGCTCAATTCTGCCTGCACATACTAAGA
CCAAATCAGTGACTAGACAGGACATTTCCCTTCATCATGAATGCTTTAACTCAACAGTATTGAGATTTAC
TGATGAAATACTGGTTAGTGAACTGCAGCCCTTTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTG
AGACCAGATACTAGTTTGCATTCACCAGAACGAGAAAGGGGTAGATGGTCCCCCTCCCTAGATAGGAGAC
GACCTCCTAGTCCCAGGATTCAAATCCAGCATGCGTCTCCGGAGAATGACAGGCACTCCAGAAAGTCTGA
AAGATCTAGCATCCAAAAACAGACTAGGAAAGGCACTGCCTCTGATGCAGAAAGGGTTCTCCCAACATGT
CTTTCTAGAAGGGGACACGCAGCCCCAAGAGCAACTGATCAGCCAGTCATTAGGGGAAAACATCCTGCTC
GCTCAAGGTCGAGTGAGCACTCTAGTATCAGAACACTGTGTTCTATGCACCACCTTGTCCCTGGAGGGTC
GGCGCCACCTTCTCCGCTTCTGACAAGAATGCACCGACAGAGAAGTCCAACACAATCTCCTCCAGCAGAC
ACATCGTTCAGCAGTCGCAGGGGAAGACAGCTCCCACAAGTGCCAGTGAGAAGCGGCAGTATAGAACAAG
CAAGCTTAGTAGTGGAGGAGCGAACAAGACAGATGAAAATGAAAGTGCATCGATTTAAGCAGACAACAGG
GTCTGGTTCTAGTCAAGAACTTGATCGCGAGCAATATTCCAAGTATAACATACATAAAGATCAGTACAGA
AGCTGTGATAACGTCTCTGCCAAATCATCAGATAGTGATGTCAGTGATGTTTCCGCCATTTCCCGAACCA
GCAGTGCCTCACGCCTCAGCAGCACAAGCTTTATGTCAGAGCAATCTGAGCGCCCCAGGGGTAGAATCAG
TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGGGACTTCAGGAAGATCCATCATGAAGAGCACCAGT
GTCAGTGGAGAGATGTACACACTGGAGCATAATGACGGCAGCCAGTCAGACACAGCTGTGGGTACAGTTG
GAGCAGGTGGAAAGAAACGGAGATCCAGCCTTAGTGCCAAAGTGGTTGCCATAGTGTCTCGAAGGAGTAG
AAGCACATCCCAGCTTAGTCAAACAGAGTCGGGCCACAAAAAGTTAAAAAGTACCATCCAGAGAAGCACA
GAAACAGGCATGGCAGCTGAAATGAGAAAGATGGTAAGGCAGCCGAGCCGAGAGTCTACTGATGGCAGCA
TCAACAGTTACAGCTCTGAGGGCAATTTAATATTTCCTGGAGTGCGACTGGGAGCTGACAGTCAATTCAG
TGATTTTCTTGATGGATTGGGACCAGCCCAGCTTGTTGGCCGCCAAACCCTTGCCACCCCTGCAATGGGT
GATATACAAATAGGAATGGAGGACAAAAAGGGCCAATTAGAAGTGGAAGTCATTAGAGCACGAAGCCTCA
CACAAAAGCCTGGTTCCAAATCTACACCTGCTCCATATGTCAAAGTATATCTTTTGGAAAATGGGGCCTG
TATAGCCAAGAAGAAGACAAGAATTGCACGAAAAACCCTTGATCCTTTGTATCAGCAGTCTCTGGTTTTT
GATGAAAGTCCACAGGGTAAAGTTCTTCAGGTGATTGTCTGGGGAGACTATGGCAGAATGGACCACAAAT
GCTTTATGGGTGTGGCTCAGATCTTGTTGGAAGAACTCGACCTGTCCAGCATGGTGATCGGATGGTACAA
ATTGTTCCCACCGTCCTCACTGGTGGATCCCACACTCACTCCCCTCACCCGGCGGGCTTCCCAGTCATCT
CTGGAAAGTTCAACTGGGCCTCCCTGTATTCGATCATAG

Translation (1692 aa):
MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTP
RNAENQPHQPSPRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFC
ARCGGRVSLRSNNEDKVVMWVCNLCRKQQEILTKSGAWFFGSGPQQTSQDGTLSDTATGAGSEVPREKKA
RLQERSRSQTPLSTAAASSQDAAPPSAPPDRSKGAEPSQQALGPEQKQASSRSRSEPPRERKKTPGLSEQ
NGKGALKSERKRVPKTSAQPVEGAVEERERKERRESRRLEKGRSQDYPDTPEKRDEGKAADEEKQRKEED
YQTRYRSDPNLARYPVKPPPEEQQMRMHARVSRARHERRHSDVALPRTEAGAALPEGKAGKRAPAAARAS
PPDSPRAYSAERTAETRAPGAKQLTNHSPPAPRHGPVPAEAPELKAQEPLRKQSRLDPSSAVLMRKAKRE
KVETMLRNDSLSSDQSESVRPSPPKPHRSKRGGKKRQMSVSSSEEEGVSTPEYTSCEDVELESESVSEKG
DLDYYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGR
LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIP
ESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLP
ARVDGRPRNPYVKMYFLPDRSDKSKRRTKTVKKILEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQE
EESEFLGEILIELETALLDDEPHWYKLQTHDESSLPLPQPSPFMPRRHIHGESSSKKLQRSQRISDSDIS
DYEVDDGIGVVPPVGYRSSARESKSTTLTVPEQQRTTHHRSRSVSPHRGNDQGKPRSRLPNVPLQRSLDE
IHPTRRSRSPTRHHDASRSPVDHRTRDVDSQYLSEQDSELLMLPRAKRGRSAECLHTTRHLVRHYKTLPP
KMPLLQSSSHWNIYSSILPAHTKTKSVTRQDISLHHECFNSTVLRFTDEILVSELQPFLDRARSASTNCL
RPDTSLHSPERERGRWSPSLDRRRPPSPRIQIQHASPENDRHSRKSERSSIQKQTRKGTASDAERVLPTC
LSRRGHAAPRATDQPVIRGKHPARSRSSEHSSIRTLCSMHHLVPGGSAPPSPLLTRMHRQRSPTQSPPAD
TSFSSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDREQYSKYNIHKDQYR
SCDNVSAKSSDSDVSDVSAISRTSSASRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRSIMKSTS
VSGEMYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRST
ETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQFSDFLDGLGPAQLVGRQTLATPAMG
DIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF
DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSS
LESSTGPPCIRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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