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Report for CCDS3046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3046.1 Public Homo sapiens 3 SEC61A1 24 110 108 CCDS HistoryNCBI Gene:29927Re-query CCDS DB by CCDS ID:3046.1Re-query CCDS DB by GeneID:29927See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243253.8 ENSP00000243253.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243253.8Link to Ensembl Protein Viewer:ENSP00000243253.3Re-query CCDS DB by Nucleotide ID:ENST00000243253Re-query CCDS DB by Protein ID:ENSP00000243253
Original member Current member NCBI NM_013336.4 NP_037468.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013336.4Link to Protein Sequence:NP_037468.1Re-query CCDS DB by Nucleotide ID:NM_013336Re-query CCDS DB by Protein ID:NP_037468Link to BLAST:NP_037468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037468.1 476 P61619-1 476 100% 0 0

Chromosomal Locations for CCDS 3046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 128052553 128052559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128052835 128052902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128055516 128055581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128055673 128055751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128056709 128056840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128060102 128060211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128060508 128060661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128064877 128065037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128066954 128067151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128067421 128067612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128067983 128068059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 128069476 128069662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCAATCAAATTTCTGGAAGTCATCAAGCCCTTCTGTGTCATCCTGCCGGAAATTCAGAAGCCAGAGA
GGAAGATTCAGTTTAAGGAGAAAGTGCTGTGGACCGCTATCACCCTCTTTATCTTCTTAGTGTGCTGCCA
GATTCCCCTGTTTGGGATCATGTCTTCAGATTCAGCTGACCCTTTCTATTGGATGAGAGTGATTCTAGCC
TCTAACAGAGGCACATTGATGGAGCTAGGGATCTCTCCTATTGTCACGTCTGGCCTTATAATGCAACTCT
TGGCTGGCGCCAAGATAATTGAAGTTGGTGACACCCCAAAAGACCGAGCTCTCTTCAACGGAGCCCAAAA
GTTATTTGGCATGATCATTACTATCGGCCAGTCTATCGTGTATGTGATGACCGGGATGTATGGGGACCCT
TCTGAAATGGGTGCTGGAATTTGCCTGCTAATCACCATTCAGCTCTTTGTTGCTGGCTTAATTGTCCTAC
TTTTGGATGAACTCCTGCAAAAAGGATATGGCCTTGGCTCTGGTATTTCTCTCTTCATTGCAACTAACAT
CTGTGAAACCATCGTATGGAAGGCATTCAGCCCCACTACTGTCAACACTGGCCGAGGAATGGAATTTGAA
GGTGCTATCATCGCACTTTTCCATCTGCTGGCCACACGCACAGACAAGGTCCGAGCCCTTCGGGAGGCGT
TCTACCGCCAGAATCTTCCCAACCTCATGAATCTCATCGCCACCATCTTTGTCTTTGCAGTGGTCATCTA
TTTCCAGGGCTTCCGAGTGGACCTGCCAATCAAGTCGGCCCGCTACCGTGGCCAGTACAACACCTATCCC
ATCAAGCTCTTCTATACGTCCAACATCCCCATCATCCTGCAGTCTGCCCTGGTGTCCAACCTTTATGTCA
TCTCCCAAATGCTCTCAGCTCGCTTCAGTGGCAACTTGCTGGTCAGCCTGCTGGGCACCTGGTCGGACAC
GTCTTCTGGGGGCCCAGCACGTGCTTATCCAGTTGGTGGCCTTTGCTATTACCTGTCCCCTCCAGAATCT
TTTGGCTCCGTGTTAGAAGACCCGGTCCATGCAGTTGTATACATAGTGTTCATGCTGGGCTCCTGTGCAT
TCTTCTCCAAAACGTGGATTGAGGTCTCAGGTTCCTCTGCCAAAGATGTTGCAAAGCAGCTGAAGGAGCA
GCAGATGGTGATGAGAGGCCACCGAGAGACCTCCATGGTCCATGAACTCAACCGGTACATCCCCACAGCC
GCGGCCTTTGGTGGGCTGTGCATCGGGGCCCTCTCGGTCCTGGCTGACTTCCTAGGCGCCATTGGGTCTG
GAACCGGGATCCTGCTCGCAGTCACAATCATCTACCAGTACTTTGAGATCTTCGTTAAGGAGCAAAGCGA
GGTTGGCAGCATGGGGGCCCTGCTCTTCTGA

Translation (476 aa):
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILA
SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDP
SEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFE
GAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYP
IKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPES
FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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