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Report for CCDS12714.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12714.2 Public Homo sapiens 19 ODAD1 24 110 108 CCDS HistoryNCBI Gene:93233Re-query CCDS DB by CCDS ID:12714.2Re-query CCDS DB by GeneID:93233See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12714.1
The coding region has been updated to represent an alternate splice form that is more supported by the available transcript and protein data. The translation initiation AUG codon of the update has a strong Kozak sequence. Currently, BC007730.2 is the only valid full-length mRNA. Several transcripts indicate that another variant with a longer 5' end exists, but none of the representative mRNAs are valid due to incomplete processing and/or non-consensus splice sites elsewhere.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12714.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315396.7 ENSP00000318429.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000315396.7Link to Ensembl Protein Viewer:ENSP00000318429.7Re-query CCDS DB by Nucleotide ID:ENST00000315396Re-query CCDS DB by Protein ID:ENSP00000318429
Original member Current member NCBI NM_144577.4 NP_653178.3 Accepted alive Link to Nucleotide Sequence:NM_144577.4Link to Protein Sequence:NP_653178.3Re-query CCDS DB by Nucleotide ID:NM_144577Re-query CCDS DB by Protein ID:NP_653178Link to BLAST:NP_653178.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653178.3 670 Q96M63-1 670 100% 0 0

Chromosomal Locations for CCDS 12714.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48296976 48297518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48297590 48297668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48298000 48298097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48298177 48298340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48302694 48302862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48303013 48303095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48303650 48303784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48303953 48304140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48306256 48306323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48311553 48311666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48311994 48312116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48318387 48318576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48318713 48318771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGAAGGGGAGAGGCGGGCCTACAGCAAGGAAGTCCACCAGCGCATCAACAAGCAACTTGAGGAGATCC
GGCGCTTGGAGGAGGTACGGGGCGATCTCCAGGTGCAGATCAGCGCAGCCCAGAACCAGGTCAAGCGGCT
TCGGGACAGTCAGCGGCTGGAGAACATGGACCGCCTGCTGAAGGGCCGGGCCCAGGTGCAGGCGGAGATC
GAGGAGCTGCAGGAGCAGACCAGGGCCCTGGACAAGCAGATCCAGGAGTGGGAGACGCGGATCTTTACCC
ACAGTAAGAATGTCAGGTCCCCGGGATTCATCCTGGATCAGAAGGTCAAGATCAGGCGAAGGATCAGGAT
CCTAGAAAACCAGTTGGACAGGGTCACCTGTCACTTTGACAACCAGCTGGTACGGAATGCGGCCCTGCGG
GAGGAGCTGGATCTGCTGCGGATCGACAGGAACCGCTATCTGAACGTGGACCGCAAGCTGAAGAAGGAGA
TCCACCACCTGCATCACCTGGTCAGCACCCTTATCCTCTCCTCCACCTCTGCCTACGCCGTCAGGGAGGA
GGCGAAGGCCAAGATGGGCTTGCTGCGGGAGCGCGCGGAGAAAGAGGAGGCCCAGAGCGAGATGGAGGCG
CAGGTCCTGCAGCGGCAGATCTTGCACCTGGAGCAGCTGCACCACTTCCTCAAGCTCAAGAACAACGACC
GGCAGCCGGATCCCGATGTCCTGGAGAAGCGTGAAAAGCAGGCCGGGGAGGTGGCCGAGGGCGTCTGGAA
GACCTCCCAGGAGAGGCTGGTGCTTTGCTACGAGGACGCCCTGAATAAACTGTCCCAGCTGATGGGGGAG
AGTGACCCTGACCTGTTGGTGCAGAAGTATCTGGAGATCGAGGAGCGCAACTTTGCTGAGTTCAACTTCA
TCAACGAGCAGAACTTGGAGCTGGAGCATGTGCAGGAAGAGATCAAGGAGATGCAGGAGGCTTTGGTGAG
CGCACGTGCCAGCAAGGATGACCAGCATTTGCTGCAGGAGCAGCAGCAGAAGGTGTTGCAGCAGCGCATG
GACAAGGTGCACTCGGAGGCTGAGCGCCTTGAGGCCCGCTTCCAGGATGTGCGGGGACAGCTGGAGAAGC
TCAAGGCTGATATCCAGCTCCTCTTCACCAAGGCCCATTGCGACAGCAGCATGATCGATGACCTCCTTGG
GGTCAAGACCAGCATGGGAGACCGGGACATGGGCCTCTTCCTGAGCCTCATTGAGAAGCGGCTGGTGGAG
CTCCTGACAGTGCAGGCCTTCCTACATGCCCAGAGCTTCACCTCCCTGGCCGACGCTGCCCTCCTAGTGC
TGGGCCAGAGCCTGGAGGACCTTCCGAAGAAGATGGCCCCACTTCAGCCCCCTGACACTCTAGAAGACCC
CCCGGGTTTTGAGGCCAGCGATGACTACCCCATGAGCAGGGAGGAGCTGCTGAGCCAAGTGGAGAAGCTG
GTGGAGCTCCAGGAGCAGGCGGAGGCGCAGCGCCAGAAGGACCTGGCCGCCGCCGCCGCGAAGCTGGACG
GCACCCTGAGCGTGGACCTGGCCAGCACCCAGAGGGCCGGCTCCAGTACCGTCCTGGTGCCCACCAGGCA
CCCCCATGCCATCCCCGGGTCCATTTTGAGCCACAAGACTAGCAGAGACCGTGGCTCTCTTGGCCACGTC
ACTTTTGGCGGCCTCAGCTCCAGCACTGGGCATTTGCCCAGCCACATCACGCACGGTGACCCCAACACTG
GCCACGTGACCTTCGGCTCCACCAGTGCCTCGAGTGGGGGCCACGTGACCTTCAGACCCGTCAGCGCCAG
CAGCTACCTGGGCTCCACTGGATACGTGGGGTCCAGCAGGGGCGGAGAAAACACAGAGGGTGGTGTGGAG
AGCGGAGGCACAGCGTCTGATTCGAGCGGAGGCCTCGGGTCCAGCAGAGACCACGTCTCCAGCACCGGCC
CTGCCTCCAGCACTGGCCCGGGCTCCTCCACCAGCAAAGACTCCCGGGGCTAA

Translation (670 aa):
MEGERRAYSKEVHQRINKQLEEIRRLEEVRGDLQVQISAAQNQVKRLRDSQRLENMDRLLKGRAQVQAEI
EELQEQTRALDKQIQEWETRIFTHSKNVRSPGFILDQKVKIRRRIRILENQLDRVTCHFDNQLVRNAALR
EELDLLRIDRNRYLNVDRKLKKEIHHLHHLVSTLILSSTSAYAVREEAKAKMGLLRERAEKEEAQSEMEA
QVLQRQILHLEQLHHFLKLKNNDRQPDPDVLEKREKQAGEVAEGVWKTSQERLVLCYEDALNKLSQLMGE
SDPDLLVQKYLEIEERNFAEFNFINEQNLELEHVQEEIKEMQEALVSARASKDDQHLLQEQQQKVLQQRM
DKVHSEAERLEARFQDVRGQLEKLKADIQLLFTKAHCDSSMIDDLLGVKTSMGDRDMGLFLSLIEKRLVE
LLTVQAFLHAQSFTSLADAALLVLGQSLEDLPKKMAPLQPPDTLEDPPGFEASDDYPMSREELLSQVEKL
VELQEQAEAQRQKDLAAAAAKLDGTLSVDLASTQRAGSSTVLVPTRHPHAIPGSILSHKTSRDRGSLGHV
TFGGLSSSTGHLPSHITHGDPNTGHVTFGSTSASSGGHVTFRPVSASSYLGSTGYVGSSRGGENTEGGVE
SGGTASDSSGGLGSSRDHVSSTGPASSTGPGSSTSKDSRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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