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Report for CCDS59402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59402.1 Public Homo sapiens 19 SELENOW 24 110 108 CCDS HistoryNCBI Gene:6415Re-query CCDS DB by CCDS ID:59402.1Re-query CCDS DB by GeneID:6415See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Contains selenocysteine

Sequence IDs included in CCDS 59402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595615.1 ENSP00000470941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595615.1Link to Ensembl Protein Viewer:ENSP00000470941.1Re-query CCDS DB by Nucleotide ID:ENST00000595615Re-query CCDS DB by Protein ID:ENSP00000470941
Original member Current member EBI ENST00000593892.5 ENSP00000471149.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593892.5Link to Ensembl Protein Viewer:ENSP00000471149.1Re-query CCDS DB by Nucleotide ID:ENST00000593892Re-query CCDS DB by Protein ID:ENSP00000471149
Original member Current member EBI ENST00000601048.6 ENSP00000473185.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000601048.6Link to Ensembl Protein Viewer:ENSP00000473185.1Re-query CCDS DB by Nucleotide ID:ENST00000601048Re-query CCDS DB by Protein ID:ENSP00000473185
Original member Current member NCBI NM_003009.4 NP_003000.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003009.4Link to Protein Sequence:NP_003000.1Re-query CCDS DB by Nucleotide ID:NM_003009Re-query CCDS DB by Protein ID:NP_003000Link to BLAST:NP_003000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003000.1 87 P63302 87 100% 0 0

Chromosomal Locations for CCDS 59402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47778786 47778814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47780725 47780749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47780864 47780917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47781108 47781182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47781290 47781370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 13

Nucleotide Sequence (264 nt):
ATGGCTCTCGCCGTCCGAGTCGTTTATTGTGGCGCTTGAGGCTACAAGTCCAAGTATCTTCAGCTCAAGA
AGAAGTTAGAAGATGAGTTCCCCGGCCGCCTGGACATCTGCGGCGAGGGAACTCCCCAGGCCACCGGGTT
CTTTGAAGTGATGGTAGCCGGGAAGTTGATTCACTCTAAGAAGAAAGGCGATGGCTACGTGGACACAGAA
AGCAAGTTTCTGAAGTTGGTGGCCGCCATCAAAGCCGCCTTGGCTCAGGGCTAA

Translation (87 aa):
MALAVRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTE
SKFLKLVAAIKAALAQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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