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Report for CCDS57709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57709.1 Public Mus musculus 9 Cmtm7 23 108 98 CCDS HistoryNCBI Gene:102545Re-query CCDS DB by CCDS ID:57709.1Re-query CCDS DB by GeneID:102545See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084867.8 ENSMUSP00000081927.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084867.8Link to Ensembl Protein Viewer:ENSMUSP00000081927.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000084867Re-query CCDS DB by Protein ID:ENSMUSP00000081927
Original member Current member NCBI NM_001252479.1 NP_001239408.1 Accepted alive Link to Nucleotide Sequence:NM_001252479.1Link to Protein Sequence:NP_001239408.1Re-query CCDS DB by Nucleotide ID:NM_001252479Re-query CCDS DB by Protein ID:NP_001239408Link to BLAST:NP_001239408.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239408.1 134 Q9ESD6-2 134 100% 0 0

Chromosomal Locations for CCDS 57709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 114757278 114757291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114758805 114758886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114763219 114763392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 114781668 114781802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGTCTCATGGATCGGGGCTCGTCCGGACCACGTGCAGCAGCGGCGGCGCGCTGGGGCCAGGCCAGCCCT
CGGAGGGACTGCTGGACCGGGTGTACCCGCTCACCCACGGCGCCCTGTTCAAAGTGGCGCAGATGGTCAC
CCTGCTGATTGCCTTCATCTGTGTACGAAGCTCCGTTCCGATCGACTATGGTGCCCACAGCTTCTTCGAA
GTCGTCACCATGTGCGACCTGATAATGATCCTCATCTTTTACCTGGTGCACCTCTTCCGCTTCTACCGTG
TGCTCACCTGCATCAGCTGGCCCCTGTCGATCTTTGGGTTCCTGGCCAGCTTCCTCTGCCTAGCGAGCTT
GTGGCTGTCCTACAAGATCACCTGTATAACCCAGTCTTCAGATGCATCTGCCTGA

Translation (134 aa):
MSHGSGLVRTTCSSGGALGPGQPSEGLLDRVYPLTHGALFKVAQMVTLLIAFICVRSSVPIDYGAHSFFE
VVTMCDLIMILIFYLVHLFRFYRVLTCISWPLSIFGFLASFLCLASLWLSYKITCITQSSDASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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