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Report for CCDS57119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57119.1 Public Mus musculus 18 Ik 23 108 98 CCDS HistoryNCBI Gene:24010Re-query CCDS DB by CCDS ID:57119.1Re-query CCDS DB by GeneID:24010See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007042.5 ENSMUSP00000007042.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007042.5Link to Ensembl Protein Viewer:ENSMUSP00000007042.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000007042Re-query CCDS DB by Protein ID:ENSMUSP00000007042
Original member Current member NCBI NM_011879.2 NP_036009.1 Accepted alive Link to Nucleotide Sequence:NM_011879.2Link to Protein Sequence:NP_036009.1Re-query CCDS DB by Nucleotide ID:NM_011879Re-query CCDS DB by Protein ID:NP_036009Link to BLAST:NP_036009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036009.1 557 Q9Z1M8 557 100% 0 0

Chromosomal Locations for CCDS 57119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36744773 36744788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36745611 36745677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36747348 36747440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36748164 36748223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36748551 36748718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36748871 36748985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36749214 36749284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36749391 36749437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36751104 36751267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36752357 36752465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36753262 36753301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36753427 36753652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36753892 36753910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36754553 36754631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36755425 36755505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36755697 36755754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36756548 36756636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36756822 36756930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36757284 36757318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36757407 36757434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCCAGAACGAGATAGTGAGCCCTTCTCTAACCCTTTGGCTCCAGATGGCCACGATGTGGATGATCCTC
ATTCCTTCCACCAATCAAAACTTACCAATGAAGACTTCAGGAAACTTCTTATGACCCCAAGAGCTGCACC
TACTTCTGCGCCACCTTCTAAGTCACGTCACCATGAGATGCCAAGGGAGTACAATGAGGATGAAGACCCA
GCTGCACGAAGGAGGAAAAAGAAAAGTTATTATGCCAAGCTTCGCCAGCAAGAAATTGAGAGAGAGAGAG
AACTCGCAGAGAAATACCGGGACCGTGCCAAGGAACGGAGAGATGGTGTGAACAAAGACTATGAGGAAAC
TGAGCTGATAAGTACCACAGCCAACTACAGGGCTGTGGGCCCCACTGCTGAGGCGGACAAATCAGCAGCA
GAGAAGAGAAGACAGTTGATTCAGGAGTCCAAATTCTTGGGTGGTGATATGGAACACACCCATTTGGTGA
AAGGTTTGGATTTTGCGTTGCTTCAAAAGGTGCGCGCTGAGATTGCCAGCAAAGAGAAGGAGGAAGAGGA
ACTCATGGAAAAGCCCCAAAAGGAAACCAAGAAAGATGAGGATCCTGAGAACAAAATTGAATTTAAAACA
CGCCTTGGCCGGAATGTGTATCGGATGCTTTTCAAGAGTAAATCATATGAGCGAAATGAGCTGTTCTTAC
CAGGACGTATGGCCTATGTAGTAGACCTGGATGATGAGTACGCAGACACAGATATCCCCACCACTCTCAT
ACGCAGCAAAGCTGATTGCCCCACTATGGAGGCCCAGACTACACTGACTACAAATGACATTGTTATTAGC
AAGCTCACCCAGATTTTGTCATACCTGAGGCAGGGGACCCGAAACAAGAAGCTCAAGAAGAAGGATAAAG
GAAAACTGGAAGAGAAGAAACCTCCTGAGGCTGACATGAACATTTTTGAAGACATTGGGGATTACGTTCC
TTCTACAACCAAGACACCTCGGGACAAGGAACGTGAGAGATACCGGGAACGTGAACGTGATCGGGAACGG
GACAGAGACAGGGAGCGAGACAGGGAGCGAGACCGTGAGAGGGAGAGAGAGCGAGACCGGGAACGGGAAC
GAGAGGAGGAAAAGAAAAGGCACAGCTACTTTGAGAAGCCAAAAGTGGATGATGAGCCCATGGATGTTGA
CAAAGGACCTGGATCTGCAAAAGAGTTGATCAAGTCCATCAATGAAAAATTCGCTGGGTCTGCTGGCTGG
GAAGGCACTGAATCGTTGAAGAAGCCAGAAGATAAGAAGCAGCTGGGCGATTTCTTTGGCATGTCCAACA
GTTACGCAGAATGCTATCCAGCCACGATGGATGACATGGCTGTAGATAGTGATGAAGAGGTAGATTATAG
CAAAATGGACCAGGGTAACAAGAAGGGTCCCTTAGGCCGCTGGGACTTCGATACTCAGGAGGAATACAGC
GAGTACATGAACAACAAGGAGGCTCTGCCCAAGGCTGCATTCCAGTATGGCATCAAGATGTCTGAAGGAC
GGAAAACCAGACGATTCAAAGAAACCAATGATAAGGCAGAGCTTGATCGACAGTGGAAGAAAATAAGTGC
AATCATTGAGAAGAGGAAGAGGATGGAAGCAGATGGGGTCGAAGTGAAAAGACCAAAGTACTAA

Translation (557 aa):
MPERDSEPFSNPLAPDGHDVDDPHSFHQSKLTNEDFRKLLMTPRAAPTSAPPSKSRHHEMPREYNEDEDP
AARRRKKKSYYAKLRQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEADKSAA
EKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKT
RLGRNVYRMLFKSKSYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVIS
KLTQILSYLRQGTRNKKLKKKDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERERDRER
DRDRERDRERDRERERERDREREREEEKKRHSYFEKPKVDDEPMDVDKGPGSAKELIKSINEKFAGSAGW
EGTESLKKPEDKKQLGDFFGMSNSYAECYPATMDDMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYS
EYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEADGVEVKRPKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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