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Report for CCDS47253.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47253.2 Public Homo sapiens 5 TMEM232 24 110 108 CCDS HistoryNCBI Gene:642987Re-query CCDS DB by CCDS ID:47253.2Re-query CCDS DB by GeneID:642987See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 47253.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. It should be noted that the start codon of this representation is conserved only in higher primate species. It has a weak Kozak signal, and it is therefore possible that leaky scanning by ribosomes may occur some of the time, which may allow the use of a better conserved downstream start codon. The use of the latter would result in a protein that is 2 aa shorter at the N-terminus. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47253.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455884.7 ENSP00000401477.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455884.7Link to Ensembl Protein Viewer:ENSP00000401477.2Re-query CCDS DB by Nucleotide ID:ENST00000455884Re-query CCDS DB by Protein ID:ENSP00000401477
Original member Current member NCBI NM_001039763.4 NP_001034852.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039763.4Link to Protein Sequence:NP_001034852.3Re-query CCDS DB by Nucleotide ID:NM_001039763Re-query CCDS DB by Protein ID:NP_001034852Link to BLAST:NP_001034852.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034852.3 657 C9JQI7-1 657 100% 0 0

Chromosomal Locations for CCDS 47253.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110420580 110420756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110424823 110424916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110528588 110528835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110568447 110568625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110605109 110605358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110606164 110606287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110618429 110618562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110625267 110625433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110627781 110627880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110638198 110638355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110640891 110640996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110642260 110642371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110667228 110667352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGAATATGCCTGTTAACAAATCACCTATGATTAATACATGTGGAGGCATATCTTCCCCTTATCATGAAG
AGCTCTGGAAATTAAATTTTCAACATTTAAGTGGAGAAAGGGGTCATAAATCAAGGCCAACATTTTCAAT
CACAAAAGAATTCATCTTGAGATTCAATCAAACACAAAATTCCAAAGAGAAGGAAGAATTGTTGGAACTA
GCTAGAAAAATCATTCTCAGATGTAAGAGAAAATTGGGTCTCAAAACCCTGGGCTCTGGAAGGCATGTGC
ATCTTCCTGCTGCATGGACTGAAGTAATATATCTGGCTCAATGCAAAGGGGAAATCCAAGATGAATCTTT
AAATATGCTTTATGCATCTCTGGACCATGCTTCCTTTGATTATGATCATCTGCCTGCCTTATTTTTTGTT
GCGGAATCGGTTTTATACAGACTGTGTTGTGATGCATCCCTCAAAACATATTTATATTCAGTTGAAATAA
AGCTAGCAAAGATTGGCTATTTGGTCTTCTTACGACTTTTTATATTTTTCCTGCATGGTCATCTAGAAAG
TTTTAAACAACATTTACTTAGGCTTCAACCATATTTATACGCACTTTCTTTCTCTGGAGCATCATATCAC
AAGTATCCAAACATCTTTTCAAATGTGCAATTCATCCTGAAAGCCTCGGAAATTATAGGTAAAAGAGAAC
TCCGTTCTGAATCCATTTTTAGACCTGTGGAAGATAAGAAAAGATATGAGAACACAGATTCTGATATGGG
AGGATATGAAATTAACCACCTGCTCTGGCACTGTGTTGCTGCTTGGTCTTGTGTTCAGAATAACAGTCCT
CAGTTGAATAACGTGCTTGAACATCTCGTCTTCCATAAGACACAGCTTCAAAAGAAATGCTGGTTGGATT
CAGTACTGGCTTTACTGGTCCTTGGGGAGGCTGCCAAATTAAACATGGCCTGCTTGAAAGCTTTAATGGA
CGTAGTGAGAGATTTTGTTTCAAGCATTATGTCTGTTCAAAATCAGGAAGAAAGTTGCAAGGTAGATGAT
TTTTCCTGGGCCTGGAATGTAGTCTACATATATACAGTAATTCTTGCAGAAATCTGCTTGTATGCAGCCA
CTTCTGATTTGCGAAAAACTGCTTTAATTGGTTTCTGTCACTGTAAAAGTTCACAAAAAAATATTTTATA
CTTGGACAAATCAGTACCTCCAGAATTAAAGGAAACAAGTATTTTAAGTCTTTTGGAATATTTCTCTTCA
AAAATGTCAGAGAACTGTGATCAAGTAGTCTGGACTGGTTACTATGGCTTAGTGTATAACCTGGTGAAAA
TTTCATGGGAACTTCAAGGAGACGAAGAACAGGATGGACTTAGAAACATGATATGGCAAACATTGCAGAA
AACAAAGGATTATGAGGAAGATGTACGAATCCAAAATGCAATCAATATAGCTCAGGCTGAGTTAAATGAC
CCAACTGATCCTTTCACTAGATATAGTACAAATATTTCATCAAATGTAGGAGAAGAAGTTTTCTCCAAAT
ATATTGGGTGGAGAATTGCCAACACTCTTTCCAAACTATTCTTTCCCCCCATTGAGGCCCATTTTCTTCC
TTTGAAGAAACCATCAATAAAAAAGGATCAAACAAAATATCCAAATAAAAAGCTGGAGTCTGTGAAAAAG
CAAGTTCTACATTTCACTGTAAGGGAACATCCTTCTGTATCAGAAATTCCCATGTTTCCATATCCAGATT
TCTTCACCAAGGCAGATAAAGAGTTGGCAAAAATCATTGACCATCACTGGCAGGAAGAGCTAAAGATCCG
AGAAAAAGAAGATGCAATATGCAAGGCCCAAGAACTTAAAGATAAAAAGTTAGCAGAGAAAAATCACTTT
CAAGAAGTTATGAAGAAAAGAGAAGAGAAACTACATAAGCAAACCAAGCCCTATGAACTTCCTTATAGGA
AGGAAGTAATTTAA

Translation (657 aa):
MNMPVNKSPMINTCGGISSPYHEELWKLNFQHLSGERGHKSRPTFSITKEFILRFNQTQNSKEKEELLEL
ARKIILRCKRKLGLKTLGSGRHVHLPAAWTEVIYLAQCKGEIQDESLNMLYASLDHASFDYDHLPALFFV
AESVLYRLCCDASLKTYLYSVEIKLAKIGYLVFLRLFIFFLHGHLESFKQHLLRLQPYLYALSFSGASYH
KYPNIFSNVQFILKASEIIGKRELRSESIFRPVEDKKRYENTDSDMGGYEINHLLWHCVAAWSCVQNNSP
QLNNVLEHLVFHKTQLQKKCWLDSVLALLVLGEAAKLNMACLKALMDVVRDFVSSIMSVQNQEESCKVDD
FSWAWNVVYIYTVILAEICLYAATSDLRKTALIGFCHCKSSQKNILYLDKSVPPELKETSILSLLEYFSS
KMSENCDQVVWTGYYGLVYNLVKISWELQGDEEQDGLRNMIWQTLQKTKDYEEDVRIQNAINIAQAELND
PTDPFTRYSTNISSNVGEEVFSKYIGWRIANTLSKLFFPPIEAHFLPLKKPSIKKDQTKYPNKKLESVKK
QVLHFTVREHPSVSEIPMFPYPDFFTKADKELAKIIDHHWQEELKIREKEDAICKAQELKDKKLAEKNHF
QEVMKKREEKLHKQTKPYELPYRKEVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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