NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22672.1 Public Mus musculus 8 Rfwd3 23 108 98 CCDS HistoryNCBI Gene:234736Re-query CCDS DB by CCDS ID:22672.1Re-query CCDS DB by GeneID:234736See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038739.4 ENSMUSP00000043780.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038739.4Link to Ensembl Protein Viewer:ENSMUSP00000043780.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038739Re-query CCDS DB by Protein ID:ENSMUSP00000043780
Original member Current member NCBI NM_146218.4 NP_666330.2 Accepted alive Link to Nucleotide Sequence:NM_146218.4Link to Protein Sequence:NP_666330.2Re-query CCDS DB by Nucleotide ID:NM_146218Re-query CCDS DB by Protein ID:NP_666330Link to BLAST:NP_666330.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666330.2 774 Q8CIK8 774 100% 0 0

Chromosomal Locations for CCDS 22672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111273020 111273163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111273811 111274022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111276220 111276434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111278195 111278371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111279886 111280036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111282517 111282745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111283275 111283389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111288058 111288149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111288229 111288411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111290871 111290938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111293991 111294175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111297135 111297642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111300135 111300180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGGCCGAAGTCGCGGTCGGCCAGGCGTCCGACTTGGTCCCCTCAGAGATGGATCATGAAGTGATATACA
GTCATCTTCAGGGACCATTAGAGGGTACTATAGAACCAGCTACTCCAACTGAAGTCGTCAGCAATGGGGC
ACCTCTCCAGCCTGCCCCTGCTGAACTGGCCAATAGCCAAGGTGGAGCACATGTTCAGCCTGCCCCTGCT
GAAGTGGTCAGCAGCCAAGATGGACTGCCCACTCTACAGCCTCTGCCACCAGCATCCATTGATTTGACGG
AGGAAGTACAGCCCTCAGAAGAAAATATGGAGGTTGTCAATCCTGGAACTTCAGAGGAGCCTAGTCAGGG
ATCTGGTGCTAACCCAACCGCCGGAGCTGCTAGATCCGTTTCAATGAACAACTTCATCAGCGGGCTGCAG
AGGCTTCATAACATGCTGGAATTGCTGAGACCTCCACCTGCAGACCACAGTGTGGGGCCAATAAGAACAA
GGAGGAGGATGGCACCCATTTTGAGGGCCAGAGCTGGAGAGTCTCAGAGGCAAGACAATGGCAGGTATGT
GCCACATACACCACTATATGCCTACTTTCAGGTAAGCAGGTCTCAGCCTTACCCACTACCCGCTGCTCAT
GATTCAGAGACCAGGAATCCACCGTCAGGCACTGACTCTGACAGCGATGGCTCTGCAGAGGATGAAGAGG
TTGTTGTCCAGGCAGAAGAACCTGAAGCCAACATTCCAGAACAAGGAGTTATCGCAACAGACCAAGAAGC
TACATCTGTCACAGGAGATGATGCAGTCCCTAAAGAGTCTCCCCAGAAGCCCAACATGCTATCTGCTATG
GAAGATGAGGAAGGTGAAACTTGCACAATATGTTTGGAACAATGGACCAATGCTGGGGACCACCGGATCT
CAGCGCTACGCTGTGGGCACCTCTTTGGATTTAGATGCATTTCTAAATGGCTCAAAGGACAAACACGAAA
ATGTCCTCAGTGCAACAAGAAAGCCAAGCACAGTGACATCGTTGTCATTTATGCCCGATCCCTGCGAGCT
TTGGACACTAGTGAACAGGAGCGCATGAAAAGTGACTTACTGAATGAGCAAATGCTCAGGAAGCAAGCTG
AGTTAGAGTCTGCACAGTGCCGGCTCCAGCTTCAGGTCCTTATTGATAAGTGCACTAAACTCAATAGCCG
TGTCCAGGACTTGGAAAAGTTTGTTGTGCGGCATCAGAACTCAGCTGCGCAGCAGTGCAGTCGCTCGAAA
GCACTTTGTGGGAAATGCCTGTCCTCCAGCCAGAGCCCAGGCAAATACAGCTCAGAAAAGACCTTCACCA
TATCTCAGACGGGAAAATGCCGAATCTTGGCCTATTGTGATGGTCTGAGCTGCCTGGTGGCCTCCCAGCC
CTCCCCTCAGGCCTCCTTTCTTCCAGGCTTTGGTGTTAAGATGTTGAGTACTGCCAACATGAAGAGCAGT
CAGTATATTCCTATGCACAACAAGCAGATTCGTGGATTATCTTTCAGCAGTCAGTCCAAAGGCTTGCTCC
TGTCTGCCTCCCTTGACTGCACTATTAAGCTGACCAGCCTAGAAACAAATACTGTGGTGCAGACTTACAA
CACTGGGCGTCCTGTCTGGAGCTGCTGCTGGTGTCTTGACGAAAACAATTACGTCTATGCTGGACTAGCC
AGTGGTTCAATTCTGATCTATGACTTACGGAACACAAACACCTATATTCAGGAATTAGTTCCTCAGAAAG
CCAGATGTCCTCTGGTATCCCTGTCATATTTACCCAAAGCTGCAGTGGCTGCATTTCCTTATGGTGGGGT
GCTGGCTGGAACATTGGAGAATGCCTCCTTCTGGGAGCTAAAATCAGACTTTTCTCATAAGCCTCATGTG
CTGTCCTTGGAGCCAGGGGGCTTTGTAGACTTTCAGACAGAGAGCAGCACCCGACACTGTCTTGTGACTT
ACAGACCTGATAAAAGCCATAACACTGTCCGAACTGTGCTATTGGAGATGTCTTACAAACTGGACGATGC
TGGAGAGCCGGTCTGTTCCTGTCTTCCTGTACAAACATTCCTTGGGGGACCCACTTGCAAACTGTTGACC
AAAAGTGCCATCTTCCAAAGCCCAGAGAATAATGGCAATGTCCTAGTATGTACTGGGGATGAAGCGTCAC
AGTCTACACTGTTGTGGAATGCTGGCAGTGGCTTGTTGCTGCAGAACCTGAAGGCTGGTGAACCTGTCCT
GGACATCTGCCCATTTGAAACGAATCAGAACAGCTATCTGGCCACCTTGACAGAGAAGACTGTCCATATG
TACAAGTGGGAGTGA

Translation (774 aa):
MAEVAVGQASDLVPSEMDHEVIYSHLQGPLEGTIEPATPTEVVSNGAPLQPAPAELANSQGGAHVQPAPA
EVVSSQDGLPTLQPLPPASIDLTEEVQPSEENMEVVNPGTSEEPSQGSGANPTAGAARSVSMNNFISGLQ
RLHNMLELLRPPPADHSVGPIRTRRRMAPILRARAGESQRQDNGRYVPHTPLYAYFQVSRSQPYPLPAAH
DSETRNPPSGTDSDSDGSAEDEEVVVQAEEPEANIPEQGVIATDQEATSVTGDDAVPKESPQKPNMLSAM
EDEEGETCTICLEQWTNAGDHRISALRCGHLFGFRCISKWLKGQTRKCPQCNKKAKHSDIVVIYARSLRA
LDTSEQERMKSDLLNEQMLRKQAELESAQCRLQLQVLIDKCTKLNSRVQDLEKFVVRHQNSAAQQCSRSK
ALCGKCLSSSQSPGKYSSEKTFTISQTGKCRILAYCDGLSCLVASQPSPQASFLPGFGVKMLSTANMKSS
QYIPMHNKQIRGLSFSSQSKGLLLSASLDCTIKLTSLETNTVVQTYNTGRPVWSCCWCLDENNYVYAGLA
SGSILIYDLRNTNTYIQELVPQKARCPLVSLSYLPKAAVAAFPYGGVLAGTLENASFWELKSDFSHKPHV
LSLEPGGFVDFQTESSTRHCLVTYRPDKSHNTVRTVLLEMSYKLDDAGEPVCSCLPVQTFLGGPTCKLLT
KSAIFQSPENNGNVLVCTGDEASQSTLLWNAGSGLLLQNLKAGEPVLDICPFETNQNSYLATLTEKTVHM
YKWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH