NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20219.1 Public Mus musculus 6 Serbp1 23 108 98 CCDS HistoryNCBI Gene:66870Re-query CCDS DB by CCDS ID:20219.1Re-query CCDS DB by GeneID:66870See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042990.6 ENSMUSP00000039110.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042990.6Link to Ensembl Protein Viewer:ENSMUSP00000039110.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042990Re-query CCDS DB by Protein ID:ENSMUSP00000039110
Original member Current member NCBI NM_025814.2 NP_080090.2 Accepted alive Link to Nucleotide Sequence:NM_025814.2Link to Protein Sequence:NP_080090.2Re-query CCDS DB by Nucleotide ID:NM_025814Re-query CCDS DB by Protein ID:NP_080090Link to BLAST:NP_080090.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080090.2 407 Q9CY58-1 407 100% 0 0

Chromosomal Locations for CCDS 20219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 67267097 67267409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67271198 67271348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67271887 67272027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67272139 67272228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67272819 67272938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67277761 67277938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67281648 67281821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 67283903 67283959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGCCTGGGCACCTACAGGAAGGCTTCGGCTGCGTGGTCACCAACCGATTCGACCAGCTATTTGACGACG
AATCGGACCCTTTCGAGGTACTGAAGGCAGCAGAGAACAAGAAAAAAGAAGCCGGCGGGGGCGGCGTTGG
GGGCCCCGGGGCCAAGAGCGCGGCTCAGGCCGCGGCCCAGACCAACTCCAACGCGGCGGGCAAACAGTTG
CGTAAAGAGTCCCAGAAAGACCGCAAGAACCCGCTGCCCCCCAGCGTCGGCGTGGCCGACAAAAAGGAGG
AGACGCAGCCGCCGGTGGCGCTTAAGAAAGAAGGAATAAGGCGAGTTGGAAGAAGACCCGATCAACAACT
ACAGGGTGATGGGAAACTAATTGATAGGAGAGCAGAAAGGCGACCACCCCGTGAAAGAAGATTTGAAAAG
CCACTTGAAGAAAAAGGTGAAGGAGGTGAATTTTCAGTTGATAGACCGATTATCGAACGGCCTATCCGAG
GCCGAGGTGGTCTTGGAAGGGGTCGAGGAGGCCGTGGACGTGGAATGGGCCGAGGCGATGGATTTGATTC
TCGTGGCAAGCGTGAATTTGATAGGCATAGTGGAAGTGATAGATCTTCTTTTTCACATTACAGTGGCCTG
AAGCATGAGGACAAACGCGGAGGTAGCGGCTCTCACAACTGGGGAACTGTCAAAGATGAATTAACAGAGT
CACCCAAATACATTCAGAAACAAATATCTTATAATTGCAGTGATTTGGATCAATCAAATGTGACTGAGGA
AACACCTGAAGGTGAAGAGCACCCTGTGGCAGATACTGAAAATAAGGAGAACGAAGTTGAAGAGGTTAAG
GAAGAGGGTCCAAAAGAGATGACTCTGGATGAGTGGAAAGCTATTCAAAATAAAGACCGAGCAAAAGTAG
AATTTAATATCCGAAAACCAAATGAAGGCGCCGATGGACAATGGAAAAAGGGATTTGTTCTGCATAAATC
AAAAAGTGAAGAGGCTCATGCTGAAGATTCAGTTATGGACCATCATTTCCGGAAGCCAGCAAATGATATA
ACATCTCAACTGGAGATCAATTTTGGAGACTTAGGCCGCCCAGGACGTGGTGGCAGAGGAGGACGTGGTG
GGCGTGGGCGTGGTGGACGTCCAAACCGTGGCAGCAGGACTGATAAGTCAAGTGCTTCTGCTCCTGATGT
AGATGACCCAGAGGCCTTCCCAGCTCTGGCCTAA

Translation (407 aa):
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQL
RKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGDGKLIDRRAERRPPRERRFEK
PLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGL
KHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVK
EEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDI
TSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH