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Report for CCDS91343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91343.1 Public Homo sapiens 10 SH3PXD2A 24 110 108 CCDS HistoryNCBI Gene:9644Re-query CCDS DB by CCDS ID:91343.1Re-query CCDS DB by GeneID:9644See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 91343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369774.9 ENSP00000358789.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369774.9Link to Ensembl Protein Viewer:ENSP00000358789.4Re-query CCDS DB by Nucleotide ID:ENST00000369774Re-query CCDS DB by Protein ID:ENSP00000358789
Original member Current member NCBI NM_001394015.1 NP_001380944.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394015.1Link to Protein Sequence:NP_001380944.1Re-query CCDS DB by Nucleotide ID:NM_001394015Re-query CCDS DB by Protein ID:NP_001380944Link to BLAST:NP_001380944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380944.1 1133 Q5TCZ1-1 1133 100% 0 0

Chromosomal Locations for CCDS 91343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103601816 103603789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103605798 103605917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103611581 103611630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103612853 103613190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103617197 103617314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103622470 103622553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103627089 103627202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103660983 103661114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103668608 103668652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103693028 103693056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103724270 103724361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103735732 103735808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103767094 103767169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103801282 103801362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103855195 103855266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3402 nt):
ATGCTCGCCTACTGCGTGCAGGATGCCACCGTGGTGGACGTGGAGAAGCGGAGGAACCCCTCCAAGCACT
ACGTATACATAATCAATGTGACCTGGTCTGACTCCACCTCCCAGACTATCTACCGGAGGTACAGCAAGTT
CTTTGACCTGCAGATGCAGCTTTTGGATAAGTTTCCCATTGAAGGTGGCCAGAAGGACCCCAAGCAAAGG
ATCATCCCCTTCCTCCCAGGCAAGATCCTCTTCCGCAGAAGCCACATCCGGGACGTAGCTGTGAAGAGAC
TGAAGCCCATCGATGAATACTGCCGGGCACTTGTCCGGCTGCCCCCCCACATCTCACAGTGTGACGAAGT
CTTCCGGTTCTTCGAGGCTCGACCCGAGGATGTCAACCCTCCAAAAGAGGACTATGGCAGTTCCAAGAGG
AAATCAGTGTGGCTGTCCAGCTGGGCTGAGTCGCCCAAGAAGGACGTGACAGGTGCCGACGCCACCGCCG
AGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAGCAGGAGAACTCGGAGCTGAGCCT
CCAGGCCGGGGAGGTGGTGGATGTCATCGAGAAGAACGAGAGCGGCTGGTGGTTCGTGAGCACTTCTGAG
GAGCAGGGCTGGGTCCCTGCCACCTACCTGGAGGCCCAGAATGGTACTCGGGATGACTCCGACATCAACA
CCTCTAAGACTGGAGAAGTGTCCAAGAGACGCAAGGCCCATCTGCGGCGCCTGGATCGCCGGTGGACCCT
GGGCGGGATGGTCAACAGGCAGCACAGCCGAGAGGAGAAGTATGTCACCGTGCAGCCTTACACCAGCCAA
AGCAAGGACGAGATTGGCTTTGAGAAGGGCGTCACAGTGGAGGTGATCCGGAAGAATCTGGAAGGCTGGT
GGTATATCAGATACCTGGGCAAAGAGGGCTGGGCGCCAGCATCCTACCTGAAGAAGGCCAAGGATGACCT
GCCAACCCGGAAGAAGAACCTGGCCGGCCCAGTGGAGATCATTGGGAACATCATGGAGATCAGCAACCTG
CTGAACAAGAAGGCGTCTGGGGACAAGGAAACTCCACCAGCCGAAGGCGAGGGCCATGAGGCCCCCATTG
CCAAGAAGGAGATCAGCCTGCCCATCCTCTGCAATGCCTCCAATGGCAGTGCCGTGGGCGTTCCTGACAG
GACTGTCTCCAGGCTGGCCCAGGGCTCTCCAGCTGTGGCCAGGATTGCCCCTCAGCGGGCCCAGATCAGC
TCCCCGAACCTACGGACAAGACCTCCACCACGCAGAGAATCCAGCCTGGGGTTCCAACTGCCAAAGCCAC
CAGAGCCCCCTTCTGTTGAGGTGGAGTACTACACCATTGCCGAATTCCAGTCGTGCATTTCCGATGGCAT
CAGCTTTCGGGGTGGACAGAAGGCAGAGGTCATTGATAAGAACTCAGGTGGCTGGTGGTACGTGCAGATC
GGTGAGAAGGAGGGCTGGGCCCCCGCATCATACATCGATAAGCGCAAGAAGCCCAACCTGAGCCGCCGCA
CAAGCACGCTGACCCGGCCCAAGGTGCCCCCGCCAGCACCCCCCAGCAAGCCCAAGGAGGCCGAGGAGGG
CCCTACGGGGGCCAGTGAGAGCCAGGACTCCCCGCGGAAGCTCAAGTATGAGGAGCCTGAGTATGACATC
CCTGCATTCGGCTTTGACTCAGAGCCTGAGCTGAGCGAGGAGCCCGTGGAGGACAGAGCCTCAGGGGAGA
GGCGGCCTGCCCAGCCCCACCGGCCCTCGCCGGCCTCTTCTCTGCAGCGGGCCCGCTTCAAGGTGGGTGA
GTCTTCAGAGGATGTGGCCCTGGAAGAGGAGACCATCTATGAGAATGAGGGCTTCCGGCCATATGCAGAG
GACACCCTGTCAGCCAGAGGCTCCTCCGGGGACAGCGACTCCCCAGGCAGCTCCTCGCTGTCCCTGACCA
GGAAAAACTCCCCCAAATCAGGCTCCCCCAAGTCATCATCACTCCTAAAGCTCAAGGCAGAGAAGAATGC
CCAGGCAGAAATGGGGAAGAACCACTCCTCAGCCTCCTTTTCCTCATCCATCACCATCAACACCACTTGC
TGCTCCTCCTCTTCCTCCTCCTCCTCTTCCTTGTCCAAAACCAGTGGCGACCTGAAGCCCCGCTCTGCTT
CGGACGCAGGCATCCGCGGCACTCCCAAGGTCAGGGCAAAGAAGGATGCTGATGCGAACGCTGGGCTGAC
CTCCTGTCCCCGGGCCAAGCCATCGGTCCGGCCCAAGCCATTCCTAAACCGAGCAGAGTCGCAGAGCCAA
GAGAAGATGGACATCAGCACTTTACGGCGCCAGCTGAGACCCACAGGCCAGCTCCGTGGAGGGCTCAAGG
GCTCCAAGAGTGAGGATTCGGAGCTGCCCCCGCAGACGGCCTCCGAGGCTCCCAGTGAGGGGTCTAGGAG
AAGCTCATCCGACCTCATCACCCTCCCAGCCACCACTCCCCCATGTCCCACCAAGAAGGAATGGGAAGGG
CCAGCCACCTCGTACATGACATGCAGCGCCTACCAGAAGGTCCAGGACTCGGAGATCAGCTTCCCCGCGG
GCGTGGAGGTGCAGGTGCTGGAGAAGCAGGAGAGCGGGTGGTGGTATGTGAGGTTTGGGGAGCTGGAGGG
CTGGGCCCCTTCCCACTATTTGGTGCTGGATGAGAACGAGCAACCTGACCCCTCTGGCAAAGAGCTGGAC
ACAGTGCCCGCCAAGGGCAGGCAGAACGAAGGCAAATCAGACAGCCTGGAGAAGATCGAGAGGCGCGTCC
AAGCACTGAACACCGTCAACCAGAGCAAGAAGGCCACGCCCCCCATCCCCTCCAAACCTCCCGGGGGCTT
CGGCAAGACCTCAGGCACTCCAGCGGTGAAGATGAGGAACGGAGTGCGGCAGGTGGCGGTCAGGCCCCAG
TCGGTGTTTGTGTCCCCGCCACCCAAGGACAACAACCTGTCCTGCGCCCTGCGGAGGAATGAGTCACTCA
CGGCCACTGATGGCCTCCGAGGCGTCCGACGGAACTCCTCCTTTAGCACTGCTCGCTCCGCTGCCGCCGA
GGCCAAGGGCCGCCTGGCCGAACGGGCTGCCAGCCAGGGTTCAGACTCACCCCTACTGCCCGCCCAGCGC
AACAGCATACCCGTGTCCCCTGTGCGCCCCAAGCCCATCGAGAAGTCTCAGTTCATCCACAATAACCTCA
AAGATGTGTACGTCTCTATCGCAGACTACGAGGGGGATGAGGAGACAGCAGGCTTCCAGGAGGGGGTGTC
CATGGAGGTTCTGGAGAGGAACCCTAATGGCTGGTGGTACTGCCAGATCCTGGATGGTGTGAAGCCCTTC
AAAGGCTGGGTGCCTTCCAACTACCTTGAGAAAAAGAACTAG

Translation (1133 aa):
MLAYCVQDATVVDVEKRRNPSKHYVYIINVTWSDSTSQTIYRRYSKFFDLQMQLLDKFPIEGGQKDPKQR
IIPFLPGKILFRRSHIRDVAVKRLKPIDEYCRALVRLPPHISQCDEVFRFFEARPEDVNPPKEDYGSSKR
KSVWLSSWAESPKKDVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSE
EQGWVPATYLEAQNGTRDDSDINTSKTGEVSKRRKAHLRRLDRRWTLGGMVNRQHSREEKYVTVQPYTSQ
SKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGNIMEISNL
LNKKASGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLAQGSPAVARIAPQRAQIS
SPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRGGQKAEVIDKNSGGWWYVQI
GEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKPKEAEEGPTGASESQDSPRKLKYEEPEYDI
PAFGFDSEPELSEEPVEDRASGERRPAQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAE
DTLSARGSSGDSDSPGSSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTC
CSSSSSSSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAESQSQ
EKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLITLPATTPPCPTKKEWEG
PATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPDPSGKELD
TVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKATPPIPSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQ
SVFVSPPPKDNNLSCALRRNESLTATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQR
NSIPVSPVRPKPIEKSQFIHNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPF
KGWVPSNYLEKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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