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Report for CCDS8583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8583.1 Public Homo sapiens 12 CLEC4C 24 110 108 CCDS HistoryNCBI Gene:170482Re-query CCDS DB by CCDS ID:8583.1Re-query CCDS DB by GeneID:170482See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360345.8 ENSP00000353500.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360345.8Link to Ensembl Protein Viewer:ENSP00000353500.3Re-query CCDS DB by Nucleotide ID:ENST00000360345Re-query CCDS DB by Protein ID:ENSP00000353500
Original member Current member EBI ENST00000542353.5 ENSP00000440428.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542353.5Link to Ensembl Protein Viewer:ENSP00000440428.1Re-query CCDS DB by Nucleotide ID:ENST00000542353Re-query CCDS DB by Protein ID:ENSP00000440428
Original member Current member NCBI NM_001371390.1 NP_001358319.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371390.1Link to Protein Sequence:NP_001358319.1Re-query CCDS DB by Nucleotide ID:NM_001371390Re-query CCDS DB by Protein ID:NP_001358319Link to BLAST:NP_001358319.1
Original member Current member NCBI NM_130441.3 NP_569708.1 Accepted alive Link to Nucleotide Sequence:NM_130441.3Link to Protein Sequence:NP_569708.1Re-query CCDS DB by Nucleotide ID:NM_130441Re-query CCDS DB by Protein ID:NP_569708Link to BLAST:NP_569708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358319.1 213 Q8WTT0-1 213 100% 0 0
NP_569708.1 213 Q8WTT0-1 213 100% 0 0

Chromosomal Locations for CCDS 8583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7729596 7729740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7730797 7730912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7737429 7737574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7741421 7741531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7746331 7746423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7747318 7747348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGTGCCTGAAGAAGAGCCTCAAGACCGAGAGAAAGGACTCTGGTGGTTCCAGTTGAAGGTCTGGTCCA
TGGCAGTCGTATCCATCTTGCTCCTCAGTGTCTGTTTCACTGTGAGTTCTGTGGTGCCTCACAATTTTAT
GTATAGCAAAACTGTCAAGAGGCTGTCCAAGTTACGAGAGTATCAACAGTATCATCCAAGCCTGACCTGC
GTCATGGAAGGAAAGGACATAGAAGATTGGAGCTGCTGCCCAACCCCTTGGACTTCATTTCAGTCTAGTT
GCTACTTTATTTCTACTGGGATGCAATCTTGGACTAAGAGTCAAAAGAACTGTTCTGTGATGGGGGCTGA
TCTGGTGGTGATCAACACCAGGGAAGAACAGGATTTCATCATTCAGAATCTGAAAAGAAATTCTTCTTAT
TTTCTGGGGCTGTCAGATCCAGGGGGTCGGCGACATTGGCAATGGGTTGACCAGACACCATACAATGAAA
ATGTCACATTCTGGCACTCAGGTGAACCCAATAACCTTGATGAGCGTTGTGCGATAATAAATTTCCGTTC
TTCAGAAGAATGGGGCTGGAATGACATTCACTGTCATGTACCTCAGAAGTCAATTTGCAAGATGAAGAAG
ATCTACATATAA

Translation (213 aa):
MVPEEEPQDREKGLWWFQLKVWSMAVVSILLLSVCFTVSSVVPHNFMYSKTVKRLSKLREYQQYHPSLTC
VMEGKDIEDWSCCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSY
FLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK
IYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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