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Report for CCDS8293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8293.1 Public Homo sapiens 11 TAF1D 24 110 108 CCDS HistoryNCBI Gene:79101Re-query CCDS DB by CCDS ID:8293.1Re-query CCDS DB by GeneID:79101See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323981.6 ENSP00000314971.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323981.6Link to Ensembl Protein Viewer:ENSP00000314971.2Re-query CCDS DB by Nucleotide ID:ENST00000323981Re-query CCDS DB by Protein ID:ENSP00000314971
Original member Current member EBI ENST00000448108.7 ENSP00000410409.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448108.7Link to Ensembl Protein Viewer:ENSP00000410409.2Re-query CCDS DB by Nucleotide ID:ENST00000448108Re-query CCDS DB by Protein ID:ENSP00000410409
Original member Current member EBI ENST00000526015.5 ENSP00000435087.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526015.5Link to Ensembl Protein Viewer:ENSP00000435087.1Re-query CCDS DB by Nucleotide ID:ENST00000526015Re-query CCDS DB by Protein ID:ENSP00000435087
Original member Current member NCBI NM_024116.4 NP_077021.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024116.4Link to Protein Sequence:NP_077021.1Re-query CCDS DB by Nucleotide ID:NM_024116Re-query CCDS DB by Protein ID:NP_077021Link to BLAST:NP_077021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077021.1 278 Q9H5J8 278 100% 0 0

Chromosomal Locations for CCDS 8293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93736161 93736304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93736694 93736751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93737064 93737239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93738109 93738499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93739237 93739304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGATAAATCAGGAATAGATTCTCTTGACCATGTGACATCTGATGCTGTGGAACTTGCAAATCGAAGTG
ATAACTCTTCTGATAGCAGCTTATTTAAAACTCAGTGTATCCCTTACTCACCTAAAGGGGAGAAAAGAAA
CCCCATTCGAAAATTTGTTCGTACACCTGAAAGTGTTCACGCAAGTGATTCATCAAGTGACTCATCTTTT
GAACCAATACCATTGACTATAAAAGCTATTTTTGAAAGATTCAAGAACAGGAAAAAGAGATATAAAAAAA
AGAAAAAGAGGAGGTACCAGCCAACAGGAAGACCACGGGGAAGACCAGAAGGAAGGAGAAATCCTATATA
CTCACTAATAGATAAGAAGAAACAATTTAGAAGCAGAGGATCTGGCTTCCCATTTTTAGAATCAGAGAAT
GAAAAAAACGCACCTTGGAGAAAAATTTTAACGTTTGAGCAAGCTGTTGCAAGAGGATTTTTTAACTATA
TTGAAAAACTGAAGTATGAACACCACCTGAAAGAATCATTGAAGCAAATGAATGTTGGTGAAGATTTAGA
AAATGAAGATTTTGACAGTCGTAGATACAAATTTTTGGATGATGATGGATCCATTTCTCCTATTGAGGAG
TCAACAGCAGAGGATGAGGATGCAACACATCTTGAAGATAACGAATGTGATATCAAATTGGCAGGGGATA
GTTTCATAGTAAGTTCTGAATTCCCTGTAAGACTGAGTGTATACTTAGAAGAAGAGGATATTACTGAAGA
AGCTGCTTTGTCTAAAAAGAGAGCTACAAAAGCCAAAAATACTGGACAGAGAGGCCTGAAAATGTGA

Translation (278 aa):
MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVHASDSSSDSSF
EPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLIDKKKQFRSRGSGFPFLESEN
EKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQMNVGEDLENEDFDSRRYKFLDDDGSISPIEE
STAEDEDATHLEDNECDIKLAGDSFIVSSEFPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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