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Report for CCDS76551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76551.1 Public Homo sapiens 12 SLC38A2 24 110 108 CCDS HistoryNCBI Gene:54407Re-query CCDS DB by CCDS ID:76551.1Re-query CCDS DB by GeneID:54407See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 76551.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612232.1 ENSP00000482873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612232.1Link to Ensembl Protein Viewer:ENSP00000482873.1Re-query CCDS DB by Nucleotide ID:ENST00000612232Re-query CCDS DB by Protein ID:ENSP00000482873
Original member Current member NCBI NM_001307936.2 NP_001294865.1 Accepted alive Link to Nucleotide Sequence:NM_001307936.2Link to Protein Sequence:NP_001294865.1Re-query CCDS DB by Nucleotide ID:NM_001307936Re-query CCDS DB by Protein ID:NP_001294865Link to BLAST:NP_001294865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294865.1 406 Q96QD8-2 406 100% 0 0

Chromosomal Locations for CCDS 76551.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 46361111 46361209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46362284 46362381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46362494 46362638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363021 46363145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363726 46363826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363924 46364003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46364389 46364556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46364644 46364702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46365107 46365189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46366864 46366945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46367076 46367168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46367267 46367340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46370776 46370789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAAACAGAATTTAATTCTCTTGACATTTGTGTCAATATTTTCCCTGTATTCTGTTCATCTCCTTTTGA
AGACTGCCAATGAAGGAGGGTCTTTATTATATGAACAATTGGGATATAAGGCATTTGGATTAGTTGGAAA
GCTTGCAGCATCTGGATCAATTACAATGCAGAACATTGGAGCTATGTCAAGCTACCTCTTCATAGTGAAA
TATGAGTTGCCTTTGGTGATCCAGGCATTAACGAACATTGAAGATAAAACTGGATTGTGGTATCTGAACG
GGAACTATTTGGTTCTGTTGGTGTCATTGGTGGTCATTCTTCCTTTGTCGCTGTTTAGAAATTTAGGATA
TTTGGGATATACCAGTGGCCTTTCCTTGTTGTGTATGGTGTTCTTTCTGATTGTGGTCATTTGCAAGAAA
TTTCAGGTTCCGTGTCCTGTGGAAGCTGCTTTGATAATTAACGAAACAATAAACACCACCTTAACACAGC
CAACAGCTCTTGTACCTGCTTTGTCACATAACGTGACTGAAAATGACTCTTGCAGACCTCACTATTTTAT
TTTCAACTCACAGACTGTCTATGCTGTGCCAATTCTGATCTTTTCATTTGTCTGTCATCCTGCTGTTCTT
CCCATCTATGAAGAACTGAAAGACCGCAGCCGTAGAAGAATGATGAATGTGTCCAAGATTTCATTTTTTG
CTATGTTTCTCATGTATCTGCTTGCCGCCCTCTTTGGATACCTAACATTTTACGAACATGTTGAGTCAGA
ATTGCTTCATACCTACTCTTCTATCTTGGGAACTGATATTCTTCTTCTCATTGTCCGTCTGGCTGTGTTA
ATGGCTGTGACCCTGACAGTACCAGTAGTTATTTTCCCAATCCGGAGTTCTGTAACTCACTTGTTGTGTG
CATCAAAAGATTTCAGTTGGTGGCGTCATAGTCTCATTACAGTGTCTATCTTGGCATTTACCAATTTACT
TGTCATCTTTGTCCCAACTATTAGGGATATCTTTGGTTTTATTGGTGCATCTGCAGCTTCTATGTTGATT
TTTATTCTTCCTTCTGCCTTCTATATCAAGTTGGTGAAGAAAGAACCTATGAAATCTGTACAAAAGATTG
GGGCTTTGTTCTTCCTGTTAAGTGGTGTACTGGTGATGACCGGAAGCATGGCCTTGATTGTTTTGGATTG
GGTACACAATGCACCTGGAGGTGGCCATTAA

Translation (406 aa):
MKQNLILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGYKAFGLVGKLAASGSITMQNIGAMSSYLFIVK
YELPLVIQALTNIEDKTGLWYLNGNYLVLLVSLVVILPLSLFRNLGYLGYTSGLSLLCMVFFLIVVICKK
FQVPCPVEAALIINETINTTLTQPTALVPALSHNVTENDSCRPHYFIFNSQTVYAVPILIFSFVCHPAVL
PIYEELKDRSRRRMMNVSKISFFAMFLMYLLAALFGYLTFYEHVESELLHTYSSILGTDILLLIVRLAVL
MAVTLTVPVVIFPIRSSVTHLLCASKDFSWWRHSLITVSILAFTNLLVIFVPTIRDIFGFIGASAASMLI
FILPSAFYIKLVKKEPMKSVQKIGALFFLLSGVLVMTGSMALIVLDWVHNAPGGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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