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Report for CCDS6421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6421.1 Public Homo sapiens 8 SCRT1 24 110 108 CCDS HistoryNCBI Gene:83482Re-query CCDS DB by CCDS ID:6421.1Re-query CCDS DB by GeneID:83482See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000569446.3 ENSP00000455711.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000569446.3Link to Ensembl Protein Viewer:ENSP00000455711.1Re-query CCDS DB by Nucleotide ID:ENST00000569446Re-query CCDS DB by Protein ID:ENSP00000455711
Original member Current member NCBI NM_031309.6 NP_112599.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031309.6Link to Protein Sequence:NP_112599.2Re-query CCDS DB by Nucleotide ID:NM_031309Re-query CCDS DB by Protein ID:NP_112599Link to BLAST:NP_112599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112599.2 348 Q9BWW7 348 100% 0 0

Chromosomal Locations for CCDS 6421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144333185 144334116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144336055 144336169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCCCAGGTCCTTCCTGGTCAAGAAGGTCAAACTTGACGCGTTCTCTTCGGCCGACCTGGAGAGCGCCT
ACGGACGCGCCCGCAGCGACCTCGGCGCGCCACTGCACGATAAAGGGTACCTCAGCGACTACGTGGGGCC
CTCGTCCGTCTACGATGGCGACGCCGAGGCTGCGCTGCTCAAAGGGCCGTCGCCGGAGCCCATGTACGCA
GCAGCTGTGCGTGGAGAGCTGGGTCCGGCGGCTGCAGGGTCTGCGCCGCCGCCCACCCCGCGCCCGGAGC
TGGCCACCGCTGCGGGCGGCTACATCAACGGCGACGCGGCCGTCAGCGAGGGCTACGCGGCGGACGCCTT
CTTCATCACCGACGGGCGCTCGCGGCGTAAGGCTTCCAATGCCGGCGCTGCCGCCGCTCCCTCCACAGCC
TCGGCGGCGGCCCCCGACGGCGACGCCGGAGGCGGGGGCGGGGCGGGCGGGCGCAGCTTGGGATCCGGGC
CGGGGGGCCGGGGCGGCACGCGCGCGGGGGCAGGCACCGAGGCGCGCGCGGGGCCAGGGGCCGCAGGTGC
TGGCGGCCGGCACGCGTGCGGCGAGTGCGGCAAAACATACGCCACGTCGTCGAACCTGAGCCGCCACAAG
CAGACGCACCGCAGCCTGGACAGCCAGCTGGCGCGGCGCTGCCCGACGTGCGGCAAGGTGTACGTGTCCA
TGCCGGCCATGGCCATGCACCTGCTCACGCACGACCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTT
CTCGCGGCCCTGGCTGCTGCAGGGCCACATGCGCTCGCACACCGGCGAGAAACCCTTCGGCTGCGCGCAC
TGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAGACGCATTCGGCCTTCAAGCACT
TCCAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCCTATCTCAACAAGCACTACGAGTCGGCCTG
CTTCAAGGGCGGCGCCGGAGGCCCCGCGGCTCCTGCGCCGCCACAGCTCAGCCCTGTGCAGGCCTAG

Translation (348 aa):
MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALLKGPSPEPMYA
AAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRSRRKASNAGAAAAPSTA
SAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHK
QTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAH
CGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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