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Report for CCDS6397.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6397.3 Public Homo sapiens 8 ZFP41 24 110 108 CCDS HistoryNCBI Gene:286128Re-query CCDS DB by CCDS ID:6397.3Re-query CCDS DB by GeneID:286128See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6397.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 6397.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330701.7 ENSP00000327427.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330701.7Link to Ensembl Protein Viewer:ENSP00000327427.6Re-query CCDS DB by Nucleotide ID:ENST00000330701Re-query CCDS DB by Protein ID:ENSP00000327427
Original member Current member EBI ENST00000522452.2 ENSP00000428966.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522452.2Link to Ensembl Protein Viewer:ENSP00000428966.3Re-query CCDS DB by Nucleotide ID:ENST00000522452Re-query CCDS DB by Protein ID:ENSP00000428966
Original member Current member EBI ENST00000520584.6 ENSP00000430465.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520584.6Link to Ensembl Protein Viewer:ENSP00000430465.3Re-query CCDS DB by Nucleotide ID:ENST00000520584Re-query CCDS DB by Protein ID:ENSP00000430465
Original member Current member NCBI NM_001271156.3 NP_001258085.3 Accepted alive Link to Nucleotide Sequence:NM_001271156.3Link to Protein Sequence:NP_001258085.3Re-query CCDS DB by Nucleotide ID:NM_001271156Re-query CCDS DB by Protein ID:NP_001258085Link to BLAST:NP_001258085.3
Original member Current member NCBI NM_173832.6 NP_776193.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173832.6Link to Protein Sequence:NP_776193.3Re-query CCDS DB by Nucleotide ID:NM_173832Re-query CCDS DB by Protein ID:NP_776193Link to BLAST:NP_776193.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258085.3 198 Q8N8Y5 198 100% 0 0
NP_776193.3 198 Q8N8Y5 198 100% 0 0

Chromosomal Locations for CCDS 6397.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143249844 143250440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGAGAAGCCTGCAGGCAGAAAAAAGAAGACGCCGACCCCAAGGGAGGAGGCAGACGTGCAGAAGAGTG
CGCTCAGAGAGGAGAAGGTGTCCGGGGACAGAAAGCCACCTGAGAGGCCCACTGTGCCCAGGAAGCCCCG
CACAGAGCCCTGCCTGAGTCCTGAAGACGAAGAGCACGTCTTTGATGCCTTCGACGCTTCATTTAAAGAT
GACTTTGAGGGGGTTCCCGTGTTCATTCCTTTTCAGAGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGC
GGATCTTTAAGCACAAGACAGACCACATTCGCCATCAGAGGGTCCACACTGGAGAGAAGCCCTTCAAGTG
TGCGCAGTGCGGGAAGGCCTTCCGGCACAGCTCTGACGTCACCAAACACCAGAGGACTCACACGGGAGAG
AAGCCCTTCAAATGCGGGGAGTGCGGGAAAGCCTTTAACTGCGGCTCCAATCTCCTGAAACATCAGAAGA
CGCACACCGGGGAGAAGCCCTACGAATGCACGCACTGTGGGAAAGCCTTTGCCTACAGCTCCTGTCTCAT
CCGCCATCAGAAACGCCACCCTCGGAAGAAGCCCTGA

Translation (198 aa):
MEKPAGRKKKTPTPREEADVQKSALREEKVSGDRKPPERPTVPRKPRTEPCLSPEDEEHVFDAFDASFKD
DFEGVPVFIPFQRKKPYECSECGRIFKHKTDHIRHQRVHTGEKPFKCAQCGKAFRHSSDVTKHQRTHTGE
KPFKCGECGKAFNCGSNLLKHQKTHTGEKPYECTHCGKAFAYSSCLIRHQKRHPRKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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