NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS61401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61401.1 Public Homo sapiens 14 RNF212B 24 110 108 CCDS HistoryNCBI Gene:100507650Re-query CCDS DB by CCDS ID:61401.1Re-query CCDS DB by GeneID:100507650See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 61401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399910.5 ENSP00000382794.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399910.5Link to Ensembl Protein Viewer:ENSP00000382794.1Re-query CCDS DB by Nucleotide ID:ENST00000399910Re-query CCDS DB by Protein ID:ENSP00000382794
Original member Current member EBI ENST00000430154.7 ENSP00000397830.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430154.7Link to Ensembl Protein Viewer:ENSP00000397830.2Re-query CCDS DB by Nucleotide ID:ENST00000430154Re-query CCDS DB by Protein ID:ENSP00000397830
Original member Current member NCBI NM_001282322.3 NP_001269251.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282322.3Link to Protein Sequence:NP_001269251.1Re-query CCDS DB by Nucleotide ID:NM_001282322Re-query CCDS DB by Protein ID:NP_001269251Link to BLAST:NP_001269251.1
Original member Current member NCBI NM_001370218.3 NP_001357147.1 Accepted alive Link to Nucleotide Sequence:NM_001370218.3Link to Protein Sequence:NP_001357147.1Re-query CCDS DB by Nucleotide ID:NM_001370218Re-query CCDS DB by Protein ID:NP_001357147Link to BLAST:NP_001357147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269251.1 300 A8MTL3 300 100% 0 0
NP_001357147.1 300 A8MTL3 300 100% 0 0

Chromosomal Locations for CCDS 61401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23240346 23240445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23243256 23243308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23244322 23244396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23258549 23258664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23259884 23259944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23260659 23260687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23262665 23262711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23262928 23262970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23264174 23264234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23264623 23264671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23268924 23268963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23269863 23269960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23270600 23270661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23272823 23272891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGATTGGTTTCATTGCAACCAGTGCTTCCGAAAAGATGGGGCCCATTTCTTTGTCACCAGCTGTGGCC
ATATTTTCTGTAAAAAGTGTGTGACTCTGGAAAAATGTGCTGTTTGTGGAACTGCCTGCAAGCATCTGGC
TCTTTCTGATAATCTGAAGCCTCAGGAGAAGATGTTTTTCAAAAGTCCTGTGGAGACAGCTTTGCAGTAT
TTTAGTCACATCTCTCAGGTGTGGAGTTTCCAGAAGAAACAAACAGATCTCCTCATCGCCTTTTATAAGC
ATAGAATTACAAAGTTAGAAACAGCCATGCAGGAGGCACAGCAAGCACTGGTGAGCCAGGACAAAGAATT
GTCAGTCTTAAGGAAGGAGAATGGAGAACTGAAGAAATTTCTAGCCATTCTAAAGGAATCTCCAAGTCGG
TACCAAGGAAGCAGGTCAATCACACCTCGACCAGTGGGCATTACTTCCCCATCACAGTCAGTTACCCCAC
GACCCAGTTTCCAGCATAGCAGTCAAGTGGTCAGTCGGTCCTCCTCAGCGGAATCTATTCCTTATAGAGA
GGCTGGCTTTGGTAGCTTGGGACAAGGAGGCAGAGGTCTGCAGGGAAGGAGAACTCCCAGAGACTCTTAT
AATGAAACCCCTTCACCGGCTTCAACTCATAGCCTATCTTATAGAACTTCATCTGCCTCCTCTGGACAGG
GGATTTTTTCTTTCAGACCATCCCCAAATGGGCATTCAGGCCACACAAGAGTCCTCACCCCCAACAATTT
TGCTCAGAGGGAGAGCACAACTACACTAGAGAGTCTTCCTAGTTTCCAGCTACCAGTCCTGCAGACTCTC
TACCAACAACGGAGGCATATGGGATTACCCAGTGGGAGAGAAGCATGGACCACTTCTAGATAG

Translation (300 aa):
MDWFHCNQCFRKDGAHFFVTSCGHIFCKKCVTLEKCAVCGTACKHLALSDNLKPQEKMFFKSPVETALQY
FSHISQVWSFQKKQTDLLIAFYKHRITKLETAMQEAQQALVSQDKELSVLRKENGELKKFLAILKESPSR
YQGSRSITPRPVGITSPSQSVTPRPSFQHSSQVVSRSSSAESIPYREAGFGSLGQGGRGLQGRRTPRDSY
NETPSPASTHSLSYRTSSASSGQGIFSFRPSPNGHSGHTRVLTPNNFAQRESTTTLESLPSFQLPVLQTL
YQQRRHMGLPSGREAWTTSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH