NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54572.1 Public Homo sapiens 3 KRBOX1 24 110 108 CCDS HistoryNCBI Gene:100506243Re-query CCDS DB by CCDS ID:54572.1Re-query CCDS DB by GeneID:100506243See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383748.9 ENSP00000373254.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383748.9Link to Ensembl Protein Viewer:ENSP00000373254.5Re-query CCDS DB by Nucleotide ID:ENST00000383748Re-query CCDS DB by Protein ID:ENSP00000373254
Original member Current member EBI ENST00000418176.1 ENSP00000388094.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418176.1Link to Ensembl Protein Viewer:ENSP00000388094.1Re-query CCDS DB by Nucleotide ID:ENST00000418176Re-query CCDS DB by Protein ID:ENSP00000388094
Original member Current member EBI ENST00000426937.5 ENSP00000413859.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426937.5Link to Ensembl Protein Viewer:ENSP00000413859.1Re-query CCDS DB by Nucleotide ID:ENST00000426937Re-query CCDS DB by Protein ID:ENSP00000413859
Original member Current member NCBI NM_001205272.2 NP_001192201.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001205272.2Link to Protein Sequence:NP_001192201.1Re-query CCDS DB by Nucleotide ID:NM_001205272Re-query CCDS DB by Protein ID:NP_001192201Link to BLAST:NP_001192201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192201.1 128 C9JBD0-1 128 100% 0 0

Chromosomal Locations for CCDS 54572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42938896 42938931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42941226 42941352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42941958 42942071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42942538 42942647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGATGACAGCTGTGTCCTTAACAACCAGGCCCCAGGAATCAGTGGCTTTTGAGGACGTGGCTGTGTACT
TCACTACGAAGGAATGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACAGGGATGTGATGCTGGAGAA
CTATGAGGCTGTGGCCTTTGTAGTGCCACCCACTTCCAAACCAGCTTTGGTCTCTCATCTGGAGCAAGGG
AAAGAGTCCTGTTTCACCCAGCCACAGGGAGTCCTAAGCAGGAATGACTGGAGAGCAGGCTGGATAGGAT
ACTTGGAACTAAGAAGATATACTTACTTAGCTAAAGCAGTGTTACGTAGAATAGTATCAAAAATTTTTCG
AAATCGTCAATGCTGGGAAGACAGGAGAAAAGCTTAA

Translation (128 aa):
MMTAVSLTTRPQESVAFEDVAVYFTTKEWAIMVPAERALYRDVMLENYEAVAFVVPPTSKPALVSHLEQG
KESCFTQPQGVLSRNDWRAGWIGYLELRRYTYLAKAVLRRIVSKIFRNRQCWEDRRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH