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Report for CCDS52587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52587.1 Public Mus musculus 8 Niban3 23 108 98 CCDS HistoryNCBI Gene:100037278Re-query CCDS DB by CCDS ID:52587.1Re-query CCDS DB by GeneID:100037278See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143662.7 ENSMUSP00000123432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143662.7Link to Ensembl Protein Viewer:ENSMUSP00000123432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143662Re-query CCDS DB by Protein ID:ENSMUSP00000123432
Original member NCBI NM_001166213.1 NP_001159685.1 Updated not alive Link to Nucleotide Sequence:NM_001166213.1Link to Protein Sequence:NP_001159685.1Re-query CCDS DB by Nucleotide ID:NM_001166213Re-query CCDS DB by Protein ID:NP_001159685
Current member NCBI NM_001166213.2 NP_001159685.1 Accepted alive Link to Nucleotide Sequence:NM_001166213.2Link to Protein Sequence:NP_001159685.1Re-query CCDS DB by Nucleotide ID:NM_001166213Re-query CCDS DB by Protein ID:NP_001159685Link to BLAST:NP_001159685.1

Chromosomal Locations for CCDS 52587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71597769 71597823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71599078 71599208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71600070 71600195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71600415 71600529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71602099 71602266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71602373 71602488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71602561 71602665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71602764 71602926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71603637 71603827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71603921 71604079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71604738 71604854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71604928 71605035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71605607 71605718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71606661 71606744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71607541 71607566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGGGGCACAGCCTTCCTGCCCCCTGGGTAGACGGCAGCGGCAGCAGCTTCAGGGTCAGGTGAATGGCA
TGCTGAGGACCTTCCTGCCCTGTTACCGTAGGCAGCTGGCTGCAGCTGTGCTCAGACACATTTCCCAGGA
GCTGGGACCCCAGGACCCAGCCGGATGCCAGCTGTCCCACACCAAAAAGCTGCCTCGAGTCAGGGAGCAC
CAAGGGCCCTTGACCCTGCTTCAGGGCCACCCACCACAGTGGCAACCAACCTTCTGTGTTCTGCGTGGAG
ACGGACGTCTAGAATGGTTCAGTCACAAGGAGAACTATGAGTCTGGGGGTTGTCCGCTGGGCTTTGCAGC
TCTGACAGGATATACACTGCTCACGTCCCAGCGTGAATACCTCTGCCTTTTGGATGACCTCTGCCCCAGC
TCCTCTGGAGATCTTGCCCTGGAGGAGCCCCTGCGGGTGCTGGAGGAGCCCGTGAGCTTCGCGCTCTTCC
TCGTGCACCCCTTCCGGGCTCACCTCTGCTTCTGCGCTCGCTCTCGGAAGGCGCACCGCGCCTGGAGGCT
CGGCCTGCAGGGTGCCATTCGTCTGAGAGCCACCGTCCTGCAGCGCAGCCGAGCGCCCGCGGCCTGCGCC
TTCCTGGATGCCGTGCTGCTCTATCGACGACGCCGGGGCTACGCTGGTGGAGACGACGGGATACTGGGCT
CCGACGCAGAGGTGCTGAGCGCGGAGCTGATGCGGGAGTTGTTGCCCGGGCTGCGAGCACAGACGCTCCG
AAGCCTGCGCGGTGCGGGACGTGCCCGAGCCCGTGCTTGCGCGGAGTTCCTCGACGCCGTGCACACGGCC
GTCCTGGCCTGGGCATCCTCGGGGCTGCGTGCCTTCCAGCCAGAGAAAGACGCACTACTGGCGGCTCTGG
AGAGGATGGTGCGCGCAGACCTCGAGCAGATCCTGCAGCAGCGCGCACTCGGAGCCCGGAGAATAGAAGC
CGAGATCCAGGGCGCAGTAGAGGCATGCCTGTGTCAGAAGGTGGACCCGCAACTGCCCCAGCTTACCCTT
GCGCTGCTGAGCCCTGTGGAAGCCACGCTCCGAGCTGTTCGGACCCTTCTCATCCAGGGGATGGACCGGC
TGTGTCACTACCTTCGCAAGAACCCTTCTGGCACTCGGCTGTGCAGGGAGGTTTATGAATTTGGGGAGAT
ACCATGGGACCCAGAGTTGATGCAGGCCTGCTACCGGGAGGCAGAGAGGAACCACAGCCATCTGGTCCAG
CTGGCAAAACCCTTTGACTTCCTGGGGATGCGGAGCCTGGTGTTTGGGGCCCAGGACCTTGCACAACAGC
TCATGGCGGCCGCAGTTACCACCTTCCTGCAGCTGGCTGACCAGTGTCTGACATCAGCTCTGGATCGTAG
CCAAGCAGCTGAGCAGCTGGGGAAAGTCAGGGGCCTTGTATTGAAGAAGTTCACCTCAGACAGTGAGACT
ACGCGATGGAGGTTCACCCGGGACTGTCTGCTGAGGATCTTCTGGCCCTTTGTATGGAGCCAGCTCCGGC
TGAGATGTAACTTGGAACCGCCAGAGGTGGATGGGGACATCCTGGCCATGGGCTGGCAGGTTCTGACCAC
TGAGGGTGTCTACAGAGATGTCATCCAGGGCCTCTTGCTGCAGAGGATTGACAGAGAATTGAAGAAGATT
CTCGGTGCCAGTGACAGAGCCTGCTCTCTAGCTGACTGCTCAGTAGCCCAGTGGGTCCAGGAAGGAGCAG
AGGAGGAAGCTGACGCTCAGCTCTAA

Translation (591 aa):
MGAQPSCPLGRRQRQQLQGQVNGMLRTFLPCYRRQLAAAVLRHISQELGPQDPAGCQLSHTKKLPRVREH
QGPLTLLQGHPPQWQPTFCVLRGDGRLEWFSHKENYESGGCPLGFAALTGYTLLTSQREYLCLLDDLCPS
SSGDLALEEPLRVLEEPVSFALFLVHPFRAHLCFCARSRKAHRAWRLGLQGAIRLRATVLQRSRAPAACA
FLDAVLLYRRRRGYAGGDDGILGSDAEVLSAELMRELLPGLRAQTLRSLRGAGRARARACAEFLDAVHTA
VLAWASSGLRAFQPEKDALLAALERMVRADLEQILQQRALGARRIEAEIQGAVEACLCQKVDPQLPQLTL
ALLSPVEATLRAVRTLLIQGMDRLCHYLRKNPSGTRLCREVYEFGEIPWDPELMQACYREAERNHSHLVQ
LAKPFDFLGMRSLVFGAQDLAQQLMAAAVTTFLQLADQCLTSALDRSQAAEQLGKVRGLVLKKFTSDSET
TRWRFTRDCLLRIFWPFVWSQLRLRCNLEPPEVDGDILAMGWQVLTTEGVYRDVIQGLLLQRIDRELKKI
LGASDRACSLADCSVAQWVQEGAEEEADAQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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