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Report for CCDS508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
508.1 Public Homo sapiens 1 KLF17 24 110 108 CCDS HistoryNCBI Gene:128209Re-query CCDS DB by CCDS ID:508.1Re-query CCDS DB by GeneID:128209See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372299.4 ENSP00000361373.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372299.4Link to Ensembl Protein Viewer:ENSP00000361373.3Re-query CCDS DB by Nucleotide ID:ENST00000372299Re-query CCDS DB by Protein ID:ENSP00000361373
Original member Current member NCBI NM_173484.4 NP_775755.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173484.4Link to Protein Sequence:NP_775755.3Re-query CCDS DB by Nucleotide ID:NM_173484Re-query CCDS DB by Protein ID:NP_775755Link to BLAST:NP_775755.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775755.3 389 Q5JT82 389 100% 0 0

Chromosomal Locations for CCDS 508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44118908 44118988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44129353 44130196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44130512 44130756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGTACGGCCGACCGCAGGCTGAGATGGAACAGGAGGCTGGGGAGCTGAGCCGGTGGCAGGCGGCGCACC
AGGCTGCCCAGGATAACGAGAACTCAGCGCCCATCTTGAACATGTCTTCATCTTCTGGAAGCTCTGGAGT
GCACACCTCTTGGAACCAAGGCCTACCAAGCATTCAGCACTTTCCTCACAGCGCAGAGATGCTGGGGTCC
CCTTTGGTGTCTGTTGAGGCGCCGGGGCAGAATGTGAATGAAGGGGGGCCACAGTTCAGTATGCCACTGC
CTGAGCGTGGTATGAGCTACTGCCCCCAAGCGACTCTCACTCCTTCCCGGATGATTTACTGTCAGAGAAT
GTCTCCCCCTCAGCAAGAGATGACGATTTTCAGTGGGCCCCAACTAATGCCCGTAGGAGAGCCCAATATT
CCAAGGGTAGCCAGGCCCTTCGGTGGGAATCTAAGGATGCCCCCCAATGGGCTGCCAGTCTCGGCTTCCA
CTGGAATCCCAATAATGTCCCACACTGGGAACCCTCCAGTGCCTTACCCTGGCCTCTCGACAGTACCTTC
TGACGAAACATTGTTGGGCCCGACTGTGCCTTCCACTGAGGCCCAGGCAGTGCTCCCCTCCATGGCTCAG
ATGTTGCCCCCGCAAGATGCCCATGACCTTGGGATGCCCCCAGCTGAGTCCCAGTCATTGCTGGTTTTAG
GATCTCAGGACTCTCTTGTCAGTCAGCCAGACTCTCAAGAAGGCCCATTTCTACCAGAGCAGCCCGGACC
TGCTCCACAGACAGTAGAGAAGAACTCCAGGCCTCAGGAAGGGACTGGTAGAAGGGGCTCCTCAGAGGCA
AGGCCTTACTGCTGCAACTACGAGAACTGCGGAAAAGCTTATACCAAACGCTCCCACCTCGTGAGCCACC
AGCGCAAGCACACAGGTGAGAGGCCATATTCTTGCAACTGGGAAAGTTGTTCATGGTCTTTCTTCCGTTC
TGATGAGCTTAGACGACATATGCGGGTACACACCAGATATCGACCATATAAATGTGATCAGTGCAGCCGG
GAGTTCATGAGGTCTGACCATCTCAAGCAACACCAGAAGACTCATCGGCCGGGACCCTCAGACCCACAGG
CCAACAACAACAATGGAGAGCAGGACAGTCCTCCTGCTGCTGGTCCTTAG

Translation (389 aa):
MYGRPQAEMEQEAGELSRWQAAHQAAQDNENSAPILNMSSSSGSSGVHTSWNQGLPSIQHFPHSAEMLGS
PLVSVEAPGQNVNEGGPQFSMPLPERGMSYCPQATLTPSRMIYCQRMSPPQQEMTIFSGPQLMPVGEPNI
PRVARPFGGNLRMPPNGLPVSASTGIPIMSHTGNPPVPYPGLSTVPSDETLLGPTVPSTEAQAVLPSMAQ
MLPPQDAHDLGMPPAESQSLLVLGSQDSLVSQPDSQEGPFLPEQPGPAPQTVEKNSRPQEGTGRRGSSEA
RPYCCNYENCGKAYTKRSHLVSHQRKHTGERPYSCNWESCSWSFFRSDELRRHMRVHTRYRPYKCDQCSR
EFMRSDHLKQHQKTHRPGPSDPQANNNNGEQDSPPAAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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