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Report for CCDS46946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46946.1 Public Homo sapiens 3 IQCJ 24 110 108 CCDS HistoryNCBI Gene:654502Re-query CCDS DB by CCDS ID:46946.1Re-query CCDS DB by GeneID:654502See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451172.5 ENSP00000402153.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451172.5Link to Ensembl Protein Viewer:ENSP00000402153.1Re-query CCDS DB by Nucleotide ID:ENST00000451172Re-query CCDS DB by Protein ID:ENSP00000402153
Original member Current member NCBI NM_001042705.3 NP_001036170.1 Accepted alive Link to Nucleotide Sequence:NM_001042705.3Link to Protein Sequence:NP_001036170.1Re-query CCDS DB by Nucleotide ID:NM_001042705Re-query CCDS DB by Protein ID:NP_001036170Link to BLAST:NP_001036170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036170.1 159 Q1A5X6-1 159 100% 0 0

Chromosomal Locations for CCDS 46946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159069433 159069441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159245843 159245907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159252727 159252807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159262548 159262683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159265215 159265403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGCGTCTGGAAGAACTGAAAAGATTGCAGAATCCTCTAGAACAAGTTAATGATGGAAAATATTCATTTG
AAAATCACCAGCTGGCCATGGATGCAGAGAATAATATTGAAAAGTATCCCCTCAATCTACAGCCCTTGGA
ATCAAAGGTGAAAATCATTCAGCGAGCATGGCGAGAGTACCTGCAGCGGCAGGAGCCCCTGGGGAAGAGG
AGCCCGTCCCCACCCTCTGTCTCCTCAGAGAAGCTGAGCAGCTCTGTCAGCATGAACACCTTCTCCGACA
GCAGCACACCCTTTGCCAGGGCCCCTGTTGGGAAGATTCATCCTTACATCTCTTGGAGGTTGCAGTCACC
TGGGGACAAGTTGCCTGGTGGAAGGAAGGTGATTCTTCTCTACCTTGACCAGCTTGCCAGACCCACTGGG
TTCATACATACTCTCAAGGAGCCCCAGATAGAAAGACTTGGTTTTCTCACCCTCCAGTGA

Translation (159 aa):
MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREYLQRQEPLGKR
SPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRKVILLYLDQLARPTG
FIHTLKEPQIERLGFLTLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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