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IQCJ IQ motif containing J [ Homo sapiens (human) ]

Gene ID: 654502, updated on 23-Nov-2021

Summary

Official Symbol
IQCJprovided by HGNC
Official Full Name
IQ motif containing Jprovided by HGNC
Primary source
HGNC:HGNC:32406
See related
Ensembl:ENSG00000214216 MIM:611622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See IQCJ in Genome Data Viewer
Location:
3q25.32
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (159069319..159266307)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (158787108..158984096)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7446 Neighboring gene uncharacterized LOC105374181 Neighboring gene IQCJ-SCHIP1 readthrough Neighboring gene microRNA 3919 Neighboring gene schwannomin interacting protein 1 Neighboring gene ribosomal protein S2 pseudogene 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough IQCJ-SCHIP1

Readthrough gene: IQCJ-SCHIP1, Included gene: SCHIP1

Homology

General protein information

Preferred Names
IQ domain-containing protein J
Names
calmodulin binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042705.3NP_001036170.1  IQ domain-containing protein J isoform CaMBPv1

    See identical proteins and their annotated locations for NP_001036170.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (CaMBPv1).
    Source sequence(s)
    AK309049, DA305468, DQ309553
    Consensus CDS
    CCDS46946.1
    UniProtKB/Swiss-Prot
    Q1A5X6
    Related
    ENSP00000402153.1, ENST00000451172.5
    Conserved Domains (1) summary
    pfam15157
    Location:4155
    IQCJ-SCHIP1; Fusion protein IQCJ-SCHIP1 with IQ-like motif
  2. NM_001042706.3NP_001036171.1  IQ domain-containing protein J isoform CaMBPv2

    See identical proteins and their annotated locations for NP_001036171.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' exon and thereby differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (CaMBPv2) has a distinct and shorter C-terminus, compared to isoform CaMBPv1.
    Source sequence(s)
    DA305468, DQ309554
    Consensus CDS
    CCDS46947.1
    UniProtKB/Swiss-Prot
    Q1A5X6
    Related
    ENSP00000380932.2, ENST00000397832.7
    Conserved Domains (1) summary
    pfam15157
    Location:4112
    IQCJ-SCHIP1; Fusion protein IQCJ-SCHIP1 with IQ-like motif
  3. NM_001197100.2NP_001184029.1  IQ domain-containing protein J isoform CaMBPv3

    See identical proteins and their annotated locations for NP_001184029.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (CaMBPv3) that is shorter than isoform CaMBPv1.
    Source sequence(s)
    AK309049, DA305468
    Consensus CDS
    CCDS56290.1
    UniProtKB/Swiss-Prot
    Q1A5X6
    Related
    ENSP00000418141.1, ENST00000482126.1
    Conserved Domains (1) summary
    pfam15157
    Location:4128
    IQCJ-SCHIP1; Fusion protein IQCJ-SCHIP1 with IQ-like motif

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    159069319..159266307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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