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Report for CCDS46552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46552.1 Public Homo sapiens 2 LRRFIP1 24 110 108 CCDS HistoryNCBI Gene:9208Re-query CCDS DB by CCDS ID:46552.1Re-query CCDS DB by GeneID:9208See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392000.4 ENSP00000375857.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392000.4Link to Ensembl Protein Viewer:ENSP00000375857.4Re-query CCDS DB by Nucleotide ID:ENST00000392000Re-query CCDS DB by Protein ID:ENSP00000375857
Original member Current member NCBI NM_001137552.2 NP_001131024.1 Accepted alive Link to Nucleotide Sequence:NM_001137552.2Link to Protein Sequence:NP_001131024.1Re-query CCDS DB by Nucleotide ID:NM_001137552Re-query CCDS DB by Protein ID:NP_001131024Link to BLAST:NP_001131024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131024.1 808 Q32MZ4-1 808 100% 0 0

Chromosomal Locations for CCDS 46552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 237692456 237692521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237708544 237708630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237719523 237719567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237720772 237720822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237748364 237748399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237749199 237749324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237751200 237751271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237753309 237753479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237756095 237756187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237760064 237760205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 237762603 237764140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGACCAGCCCCGCGGCCGCTCAAAGCCGGGAGATCGACTGTTTGAGCCCGGAAGCGCAGAAGCTGGCGG
AAGCCCGGCTCGCTGCAAAACGGGCGGCCCGCGCGGAGGCTCGCGAGATCCGCATGAAGGAGCTGGAGCG
GCAGCAGAAGGAGGAAGACAGTGAGCGCTACTCTCGTAGATCCAGAAGAAACACATCGGCTTCTGATGAA
GACGAGCGCATGTCAGTGGGTAGTCGTGGAAGCCTGAGGGTAGAAGAGAGACCAGAAAAAGATTTTACTG
AGAAGGGGTCTCGTAACATGCCGGGCCTGTCTGCAGCCACGCTGGCCTCTCTGGGTGGGACTTCCTCTCG
GAGAGGCAGCGGAGACACCTCCATCTCCATCGACACCGAGGCATCCATCAGGGAAATCAAGGAACTCAAT
GAGTTAAAGGACCAGATTCAGGATGTAGAAGGCAAATACATGCAGGGATTGAAAGAGATGAAGGACTCTC
TAGCAGAAGTTGAAGAGAAATATAAGAAGGCTATGGTTTCCAATGCTCAGCTAGACAATGAAAAGACAAA
CTTCATGTACCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGG
CGGCAGTACGAAGAGAAAAACAAAGAATTTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGT
TTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAGAAACATGGAATAATCCTAAATTC
AGAAATAGCTACCAATGGAGAGACTTCCGACACCCTCAATAATGTTGGATACCAAGGTCCTACCAAGATG
ACAAAAGAAGAGTTAAATGCCCTCAAGTCGACAGGGGATGGGACCCTAGGAAGAGCCAGTGAAGTGGAGG
TGAAAAATGAAATCGTGGCGAATGTGGGGAAAAGAGAAATCTTGCACAATACTGAGAAAGAACAACACAC
AGAGGACACAGTGAAGGACTGTGTGGACATAGAGGTATTCCCTGCTGGTGAGAATACCGAGGACCAGAAA
TCCTCTGAAGACACTGCCCCATTCCTAGGAACCTTAGCAGGTGCTACCTATGAGGAACAGGTTCAAAGCC
AAATTCTTGAGAGCAGTTCTCTCCCTGAAAACACAGTACAGGTTGAGTCAAATGAGGTCATGGGTGCACC
AGATGACAGGACCAGAACTCCCCTTGAGCCATCCAACTGTTGGAGTGACTTAGATGGTGGGAACCACACA
GAGAATGTGGGAGAGGCAGCAGTGACTCAGGTTGAAGAGCAGGCAGGCACAGTGGCCTCGTGTCCTTTAG
GGCATAGTGATGACACAGTTTATCATGATGACAAATGTATGGTAGAGGTCCCCCAAGAGTTAGAGACAAG
CACAGGGCATAGTTTAGAGAAAGAATTCACCAACCAGGAAGCAGCTGAGCCCAAGGAGGTTCCAGCGCAC
AGTACAGAAGTAGGTAGGGATCACAACGAAGAAGAGGGTGAAGAAACAGGATTAAGGGACGAGAAACCAA
TCAAGACAGAAGTTCCTGGTTCTCCAGCAGGAACTGAGGGCAACTGTCAGGAAGCGACAGGTCCAAGTAC
AGTAGACACTCAAAATGAACCCTTAGATATGAAAGAGCCCGATGAAGAAAAGAGTGACCAACAGGGAGAG
GCATTGGACTCATCGCAGAAGAAGACAAAGAACAAGAAAAAGAAAAACAAGAAGAAAAAATCCCCAGTAC
CCGTAGAAACCCTTAAAGATGTTAAAAAAGAGTTAACGTATCAGAACACAGATTTAAGTGAAATTAAGGA
AGAAGAGCAGGTAAAGTCTACTGACAGAAAGTCAGCAGTGGAAGCCCAAAACGAGGTGACTGAAAATCCA
AAACAGAAAATTGCAGCAGAAAGCAGTGAAAATGTTGATTGTCCGGAGAATCCTAAAATTAAGTTGGATG
GAAAACTTGACCAAGAAGGTGATGATGTACAAACAGCAGCTGAGGAGGTACTAGCTGATGGAGACACATT
AGATTTTGAGGATGACACCGTTCAATCATCAGGCCCGAGGGCTGGTGGTGAAGAATTAGATGAAGGTGTT
GCAAAAGATAATGCTAAAATAGATGGTGCCACTCAAAGCAGTCCTGCAGAACCAAAGAGCGAAGACGCAG
ATCGCTGCACCCTGCCCGAACATGAAAGTCCCTCACAGGACATTAGTGATGCCTGTGAAGCAGAAAGTAC
AGAGAGGTGTGAGATGTCAGAACATCCAAGTCAGACCGTCAGGAAAGCTTTAGACAGCAATAGCCTAGAG
AACGATGACTTGTCGGCACCAGGAAGAGAGCCAGGGCACTTCAATCCAGAAAGCAGAGAAGATACCAGAG
GAGGGAATGAGAAGGGCAAAAGCAAAGAAGACTGTACCATGTCCTAA

Translation (808 aa):
MTSPAAAQSREIDCLSPEAQKLAEARLAAKRAARAEAREIRMKELERQQKEEDSERYSRRSRRNTSASDE
DERMSVGSRGSLRVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKELN
ELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESR
RQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEKHGIILNSEIATNGETSDTLNNVGYQGPTKM
TKEELNALKSTGDGTLGRASEVEVKNEIVANVGKREILHNTEKEQHTEDTVKDCVDIEVFPAGENTEDQK
SSEDTAPFLGTLAGATYEEQVQSQILESSSLPENTVQVESNEVMGAPDDRTRTPLEPSNCWSDLDGGNHT
ENVGEAAVTQVEEQAGTVASCPLGHSDDTVYHDDKCMVEVPQELETSTGHSLEKEFTNQEAAEPKEVPAH
STEVGRDHNEEEGEETGLRDEKPIKTEVPGSPAGTEGNCQEATGPSTVDTQNEPLDMKEPDEEKSDQQGE
ALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKELTYQNTDLSEIKEEEQVKSTDRKSAVEAQNEVTENP
KQKIAAESSENVDCPENPKIKLDGKLDQEGDDVQTAAEEVLADGDTLDFEDDTVQSSGPRAGGEELDEGV
AKDNAKIDGATQSSPAEPKSEDADRCTLPEHESPSQDISDACEAESTERCEMSEHPSQTVRKALDSNSLE
NDDLSAPGREPGHFNPESREDTRGGNEKGKSKEDCTMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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