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Report for CCDS38162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38162.1 Public Mus musculus 2 Slc43a1 23 108 98 CCDS HistoryNCBI Gene:72401Re-query CCDS DB by CCDS ID:38162.1Re-query CCDS DB by GeneID:72401See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111625.1 ENSMUSP00000107252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111625.1Link to Ensembl Protein Viewer:ENSMUSP00000107252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111625Re-query CCDS DB by Protein ID:ENSMUSP00000107252
Original member Current member NCBI NM_001083809.1 NP_001077278.1 Accepted alive Link to Nucleotide Sequence:NM_001083809.1Link to Protein Sequence:NP_001077278.1Re-query CCDS DB by Nucleotide ID:NM_001083809Re-query CCDS DB by Protein ID:NP_001077278Link to BLAST:NP_001077278.1

Chromosomal Locations for CCDS 38162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84840774 84841005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849666 84849843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84849952 84850007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84850116 84850192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84852668 84852760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84854412 84854545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84855471 84855649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84856757 84856903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857061 84857096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84857284 84857437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84859689 84859830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84860090 84860163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84861376 84861499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84862883 84863029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGATGGAGTACCCTTCCCAAGGGCCGCTAGGAAGCCCTTCTCTGAGCGCTCTGTTTCTCTGCAGAGTCT
CGGCCACCATGGCTCCCACGCTGAAGCAGGCGTACCGCAGGCGCTGGTGGATGGCTTGCACCGCTGTGGT
GGAGAACCTCTTCTTCTCCGCGGTGCTCCTGGGCTGGGCCTCCCTGCTGATCATGCTCAAGAAGGAAGGC
TTCTATTCCAGCCTGTGCCCAGCTGAGAACAGGACCAATACCACCCAAGATGAACAGCATCAGTGGACAA
GCTGTGACCAGCAGGAAAAGATGCTCAACCTGGGTTTCACCATTGGCTCCTTCCTGCTGAGTGCTACCAC
ACTGCCTCTGGGAATTCTCATGGACCGCTTTGGGCCCAGGCCTCTTCGACTGGTGGGCAGTGCCTGCTTT
GCCGCATCCTGCACTCTAATGGCCTTGGCCTCCAGGGACACTGAAGTTTTGTCTCCATTGATATTCCTGG
CACTGTCCTTGAATGGATTTGCTGGCATCTGCTTAACGTTTACCTCACTCACGCTGCCCAACATGTTTGG
GAATTTGCGATCCACTTTCATGGCCCTCATGATTGGCTCCTATGCGTCTTCTGCCATCACGTTCCCTGGA
ATCAAGCTGATCTACGATGCCGGAGTCCCCTTCACTGTCATCATGTTCACATGGTCTGGCCTGGCCTGTC
TCATCTTTTTGAACTGTGCTCTCAACTGGCCTGCAGAAGCCTTTCCTGCCCCTGAGGAAGTTGACTACAC
GAAGAAGATCAAACTCATTGGGTTAGCCTTGGACCACAAGGTCACAGGTGACCGCTTCTACACCCATGTA
ACCATTGTGGGTCAGCGGCTGAGTCAGAAGTCCCCCAGCCTGGAGGAGGGCGCTGACGCCTTTATTTCAT
CCCCGGATATCCCTGGTACCTCAGAGGAGACTCCTGAAAAGTCTGTCCCTTTTCGCAAGAGCCTCTGCTC
CCCCATTTTCCTGTGGAGCCTTGTCACCATGGGCATGACCCAGCTTCGGGTCATCTTCTATATGGGTGCT
ATGAACAAGATCCTGGAGTTCATTGTGACTGGTGGCAAGGAACGTGAGACAAATGAGCAGAGACAGAAGG
TGGAGGAGACAGTTGAGTTCTACTCTTCCATCTTTGGAGTCATGCAGCTGTTGTGTCTTCTCACCTGCCC
CCTCATTGGCTACATCATGGACTGGCGCATCAAGGACTGTGTGGATGCTCCAACGGAGGGCACCCTGAAT
GAGAATGCTTCCTTTGGAGATGCCAGAGATGGGGCTAGCACCAAGTTCACTAGACCACGCTACCGCAAGG
TACAAAAGCTCACCAATGCCATCAATGCCTTCACCCTGACCAACATCCTGCTTGTGGGTTTCGGCATCGC
CTGCCTCATCAAGAACTTACACCTGCAGTTGCTGGCCTTTGTCCTGCATACCATAGTTCGCGGTTTCTTC
CACTCAGCCTGTGGAGGTCTCTACGCTGCTGTGTTCCCGTCCAATCATTTTGGGACACTGACAGGTCTTC
AGTCTCTCATCAGTGCCGTGTTTGCTCTGCTGCAACAGCTACTCTTCATGGCCATGGTGGGACCCCTGCA
TGGAGATCCCTTCTGGGTGAACCTGGGCCTCCTACTTCTCTCGTTCCTGGGATTTCTCCTACCTTCCTAC
CTCTACTACTACCGGTCTCGCCTGCAGAGAGAGTATGCCACCAATTTGGTAGACCCACAGAAGGTGCTCA
ATACTTCGAAGGTGGCTACATAG

Translation (590 aa):
MMEYPSQGPLGSPSLSALFLCRVSATMAPTLKQAYRRRWWMACTAVVENLFFSAVLLGWASLLIMLKKEG
FYSSLCPAENRTNTTQDEQHQWTSCDQQEKMLNLGFTIGSFLLSATTLPLGILMDRFGPRPLRLVGSACF
AASCTLMALASRDTEVLSPLIFLALSLNGFAGICLTFTSLTLPNMFGNLRSTFMALMIGSYASSAITFPG
IKLIYDAGVPFTVIMFTWSGLACLIFLNCALNWPAEAFPAPEEVDYTKKIKLIGLALDHKVTGDRFYTHV
TIVGQRLSQKSPSLEEGADAFISSPDIPGTSEETPEKSVPFRKSLCSPIFLWSLVTMGMTQLRVIFYMGA
MNKILEFIVTGGKERETNEQRQKVEETVEFYSSIFGVMQLLCLLTCPLIGYIMDWRIKDCVDAPTEGTLN
ENASFGDARDGASTKFTRPRYRKVQKLTNAINAFTLTNILLVGFGIACLIKNLHLQLLAFVLHTIVRGFF
HSACGGLYAAVFPSNHFGTLTGLQSLISAVFALLQQLLFMAMVGPLHGDPFWVNLGLLLLSFLGFLLPSY
LYYYRSRLQREYATNLVDPQKVLNTSKVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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