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Report for CCDS38161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38161.1 Public Mus musculus 2 Timm10 23 108 98 CCDS HistoryNCBI Gene:30059Re-query CCDS DB by CCDS ID:38161.1Re-query CCDS DB by GeneID:30059See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028470.9 ENSMUSP00000028470.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028470.9Link to Ensembl Protein Viewer:ENSMUSP00000028470.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028470Re-query CCDS DB by Protein ID:ENSMUSP00000028470
Original member Current member EBI ENSMUST00000111631.1 ENSMUSP00000107258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111631.1Link to Ensembl Protein Viewer:ENSMUSP00000107258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111631Re-query CCDS DB by Protein ID:ENSMUSP00000107258
Original member Current member NCBI NM_013899.2 NP_038927.2 Accepted alive Link to Nucleotide Sequence:NM_013899.2Link to Protein Sequence:NP_038927.2Re-query CCDS DB by Nucleotide ID:NM_013899Re-query CCDS DB by Protein ID:NP_038927Link to BLAST:NP_038927.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038927.2 90 P62073 90 100% 0 0

Chromosomal Locations for CCDS 38161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84827643 84827713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84829790 84829991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGGATCCGCTCAGAGCCCAGCAGCTGGCTGCGGAGCTGGAGGTGGAGATGATGGCTGACATGTACAACA
GAATGACCAGTGCCTGCCACCGGAAGTGCGTGCCTCCCCACTACAAGGAGGCAGAGCTGTCCAAAGGCGA
GTCTGTGTGTCTGGACCGATGTGTATCCAAGTACTTGGACATCCATGAGAGGATGGGCAAAAAGTTGACA
GAGCTGTCAATGCAGGATGAGGAGCTGATGAAGAGGGTACAGCAGAGCTCGGGGCCTGCATGA

Translation (90 aa):
MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT
ELSMQDEELMKRVQQSSGPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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