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Report for CCDS37894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37894.1 Public Mus musculus 19 Vps51 23 108 98 CCDS HistoryNCBI Gene:68505Re-query CCDS DB by CCDS ID:37894.1Re-query CCDS DB by GeneID:68505See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025711.12 ENSMUSP00000025711.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025711.12Link to Ensembl Protein Viewer:ENSMUSP00000025711.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025711Re-query CCDS DB by Protein ID:ENSMUSP00000025711
Original member Current member NCBI NM_001081041.1 NP_001074510.1 Accepted alive Link to Nucleotide Sequence:NM_001081041.1Link to Protein Sequence:NP_001074510.1Re-query CCDS DB by Nucleotide ID:NM_001081041Re-query CCDS DB by Protein ID:NP_001074510Link to BLAST:NP_001074510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074510.1 782 Q3UVL4-1 782 100% 0 0

Chromosomal Locations for CCDS 37894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6068115 6068375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6068855 6068942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6069026 6069147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6069465 6069683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6069858 6070073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6070439 6071156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6071266 6071485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6071562 6071708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6076363 6076492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6076951 6077178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGCGGCTGCGGCAGCTGTGGGGCCTGGCCTAGGGTCCGGGCCTGGAGACTCCCCAGAAGGTCCCGAGG
CGGACGCTCCGGAGCGTCGGCGGAAGGCTCACGGGATGCTGAAGCTTTACTACGGCCTCTCGGAGGGGGA
GGTGGCGGGGCATCCCGCAGGGCCTGACCCTCTGGACCCAACCGATCTCAATGGGGCGCACTTCGACCCG
GAAGTTTATCTTGACAAGCTGCGTAGAGAATGTCCTCTGGCCCAGCTGATGGACAGTGAGACGGACATGG
TACGGCAGATCCGGGCTCTAGACAGCGACATGCAGACCCTGGTCTATGAGAACTACAACAAGTTCATCTC
AGCTACAGACACCATTCGAAAGATGAAGAATGACTTCCGGAAGATGGAAGATGAGATGGACCGGCTGGCC
ACCAACATGGCAGTGATCACCAACTTCAGCGCACGGATCAGCGCCACGCTACAGGACCGACACGAGCGCA
TCACCAAGCTAGCAGGGGTACATGCACTACTGCGGAAGCTGCAGTTCCTTTTTGAGCTGCCTTCGCGCCT
CACCAAGTGTGTGGAGCTGGGTGCCTATGGGCAGGCAGTGCGCTATCAGGGTCGTGCCAGGGCCGTGCTG
CAGCAGTACCAGCACCTGCCCTCCTTCCGTGCCATACAGGATGACTGCCAGGTCATCACAGCTCGCTTGG
CCCAGCAGCTGCGGCAGCGCTTCAGGGAAGGCTGCTCAGGTGCCCCGGAGCAGGCCGAGTGTGTGGAGCT
GCTGCTGGCCCTGGGCGAGCCAGCTGAGGAGCTGTGCGAGGAGTTCCTGGCGCATGCGCGGGGACGGCTG
GAGGAAGAACTGAGCAGCCTGGAGGCCGAACTGGGGCCCTCCCCTCCAGCACCTGATGTGTTAGAGTTCA
CCGACCGTGGTGGCAATGGTTTTGTAGGTGGCCTCTGCCAGGTGGCAGCAGCCTACCAAGAGCTGTTTGC
TGCTCAGGGCCCTGCTGGTGCGGAGAAGCTGGCAGCCTTTGCGCAGGAGCTGGGCGGCCGCTACTTTGCA
CTGGTTGAGCGGCGGCTGGCACAGGAGCAGGGTGGTAGTGACAACTCACTGCTGGTGCGGGCACTAGATC
GCTTCCACCGGCGCCTGCGAGCACCTGGGGCCCTGCTGGCCGCTGCTGGGCTTTCAGAGTCAGCCACAGA
GATTGTGGAGCGAGTGGCCCGGGAGCGCCTGAGCCACCATCTGCAGGGTCTGAAGGCTGCCTTCCTGAGC
TCCCTGACGGATGTTCGCCAGGCCCTGGCAGCACCTCGCCTAGCGGGGAAGGAGGGCCCCAGCCTGGCTG
AGTTGCTGGCCAATGTGGCCAGCTCCATCCTAAGCCACATCAAGACGTCACTGGCTTCTGTGCATCTCTT
TACCGCCAAGGAGGTGTCCTTCTCCAATAAGCCCTACTTCAGGGGCGAGTTCTGCAGCCAGGGAGTTCGT
GAGGGCCTCATCGTGGGTTTCATCCGCTCCATGTGCCAGACAGCCCAGAGCTTCTGTGACAGCCCTGGAG
AAAAGGGAGGTGCCACGCCGCCTGCCCTGCTCCTGCTGCTCTCTCGCCTCTGCCTGGATTATGAGACAGC
CACCATCTCCTACATCCTCACACTCACTGATGAACAGTTTCTGGTGCAGGACCAGTCTCCCGTTACACCC
GTGAGCACACTGTGTGCAGAGGCCAGAGAGACAGCACGGCGGCTGCTGACTCACTATGTGAAGGTGCAAG
GCCTGGTCATATCCCAGATGCTACGTAAGAGTGTGGAGACCCGGGACTGGCTCAGTACTCTGGAGCCTAG
GAACGTGCGTGCTGTCATGAAGCGTGTGGTGGAGGACACTACAGCTATTGATGTCCAGGTGGGGCTCCTG
TATGAAGAGGGTGTCCGGAAGGCCCAGAGCAGTGACTCAAGCAAAAGGACTTTCTCTGTGTACAGCAGCT
CCCGGCAGCAGGGCCGCTATGCACCCAGCTACACACCCAGTGCTCCCATGGACACAAACCTCCTGAGCAA
TATTCAGAAGCTGTTCTCTGAACGGATCGATGTGTTCAGCCCCGTGGAATTCAACAAGGTGTCGGTGCTG
ACTGGCATCATTAAGATCAGCTTGAAGACACTACTGGAGTGTGTGCGCCTACGCACCTTTGGGCGCTTTG
GGCTGCAGCAGGTGCAGGTGGACTGCCACTTCCTGCAGCTTTACTTGTGGCGCTTTGTGGCTGATGAGGA
GCTAGTGCACCTGCTGCTGGACGAAGTAGTAGCCTCAGCTGCTCTGCGCTGTCCCGACCCAGTGCCCATG
GAACCTAGTGTTGTCGAGGTCATCTGCGAGCGCGGCTAG

Translation (782 aa):
MAAAAAVGPGLGSGPGDSPEGPEADAPERRRKAHGMLKLYYGLSEGEVAGHPAGPDPLDPTDLNGAHFDP
EVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLA
TNMAVITNFSARISATLQDRHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRARAVL
QQYQHLPSFRAIQDDCQVITARLAQQLRQRFREGCSGAPEQAECVELLLALGEPAEELCEEFLAHARGRL
EEELSSLEAELGPSPPAPDVLEFTDRGGNGFVGGLCQVAAAYQELFAAQGPAGAEKLAAFAQELGGRYFA
LVERRLAQEQGGSDNSLLVRALDRFHRRLRAPGALLAAAGLSESATEIVERVARERLSHHLQGLKAAFLS
SLTDVRQALAAPRLAGKEGPSLAELLANVASSILSHIKTSLASVHLFTAKEVSFSNKPYFRGEFCSQGVR
EGLIVGFIRSMCQTAQSFCDSPGEKGGATPPALLLLLSRLCLDYETATISYILTLTDEQFLVQDQSPVTP
VSTLCAEARETARRLLTHYVKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAIDVQVGLL
YEEGVRKAQSSDSSKRTFSVYSSSRQQGRYAPSYTPSAPMDTNLLSNIQKLFSERIDVFSPVEFNKVSVL
TGIIKISLKTLLECVRLRTFGRFGLQQVQVDCHFLQLYLWRFVADEELVHLLLDEVVASAALRCPDPVPM
EPSVVEVICERG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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