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Report for CCDS37557.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37557.1 |
Public |
Mus musculus |
17 |
Pglyrp2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57757](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37557.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57757](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37557.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000170392.8 |
ENSMUSP00000129964.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000170392.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000129964.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000170392](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000129964](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000236386.1 |
ENSMUSP00000158365.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000236386.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000158365.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000236386](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000158365](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001271476.1 |
NP_001258405.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001271476.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001258405.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001271476](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001258405](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001258405.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_021319.5 |
NP_067294.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_021319.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_067294.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_021319](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_067294](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_067294.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 37557.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1593 nt): ATGAAGGCCTGGGGTGCCCTCTGGATCGTGCTTGGATTGCTGCTGTGGCCAGAGCCAGGGGCAGCCTCCT CCTTGCCTCTGCTCATGGACTCCATCATCCAGGCCCTTGCTGAACTTGAGCAAAAGGTACCAGTGACTGA GGCCAGCATCACTGCCTCTGCATGGATTCTGTCAGCCAAGAACTCCAGCACCCACAATTCCCTTCACCAG CGCTTGCTGCTGAAGGCACCAAGCCACAACACTACAGAGCCAGATCCTCACTCTCTCAGCCCGGAGCTTC AAGCACTGATTTCTGAGGTGGCTCAACACGATGTACAGAATGGGCGGGAATATGGAGTGGTGCTGGCACC TGATGGCTCCACCGTAGCTGTGAAGCCTCTGCTGTTTGGGCTAGAGGCCGGTCTACAGGCACACAGCGTT GCTAACTTGCCTTCAGATTGTCTGGCTATCCCCTGTGATACTGGAGACACCTTGGCCAATATTAGAGCCA CCTGGCCAGGACTCATGGATGCTTTTCCAAATGCCTCTTCTCCAGATGTTGGAGCCACTTTACCAAACGA CAAAGCCAAGACTCCCACCACTGTGGACAGACTCCTGGCAATCACCTTGGCTGGTGACTTAGGTCTGACC TTCCTCCACAGGTCCCAGACTTGGAGTCCTCCAGGACTGGGAACTGAGGGCTGCTGGGACCAGCTTACTG CCCCCAGGGTCTTCACACTGTTGGACCCCCAGGCATCCAGGCTCACCATGGCTTTCCTCAATGGTGCCTT AGATGGAGCTCTCCTTGGGAACCACTTGAGCCAAATCCCTAGGCCCCACCCACCCCTCAGCCACCTGCTA AGAGAGTACTATGGAGCTGGGGTGAATGGAGATCCGGTGTTCCGAAGTAACTTCCGAAGGCAGAACGGTG CTGCTTTGACTTCAGCCCCTACCCTGGCCCAGCAGGTATGGGAGGCCCTTGTCCTGTTACAGAAACTGGA GCCAGAACACCTACAGTTGCAGAACATTAGCCAAGAGCAGCTGGCTCAGGTAGCCACCTTGGCTACCAAG GAGTTCACTGAGGCTTTCCTGGGATGCCCAGCCATTCACCCCCGCTGCCGTTGGGGAGCGGCTCCCTACC GAGGCCACCCAACACCACTCCGGCTGCCACTTGGATTCTTATATGTGCATCACACATACGTGCCAGCGCC ACCCTGCACCACCTTCCAGAGCTGCGCCGCCGATATGCGCTCCATGCAGCGTTTCCACCAGGATGTGCGC AAGTGGGATGACATCGGCTACAGTTTCGTGGTAGGCTCCGACGGCTATCTGTACCAGGGCCGTGGCTGGC ACTGGGTAGGTGCGCACACACGCGGCTACAACTCCCGCGGCTTCGGTGTGGCCTTCGTGGGCAACTACAC TGGGTCACTGCCCAACGAAGCTGCGCTGAACACGGTGCGCGACGCGCTCCCGAGCTGCGCAATTCGCGCA GGTCTCTTGCGGCCAGACTACAAGCTGCTTGGCCACCGCCAGCTAGTGCTCACCCACTGCCCCGGGAACG CGCTCTTCAACTTGCTGCGCACCTGGCCTCACTTCACAGAGGTTGAAAACTAA
Translation (530 aa): MKAWGALWIVLGLLLWPEPGAASSLPLLMDSIIQALAELEQKVPVTEASITASAWILSAKNSSTHNSLHQ RLLLKAPSHNTTEPDPHSLSPELQALISEVAQHDVQNGREYGVVLAPDGSTVAVKPLLFGLEAGLQAHSV ANLPSDCLAIPCDTGDTLANIRATWPGLMDAFPNASSPDVGATLPNDKAKTPTTVDRLLAITLAGDLGLT FLHRSQTWSPPGLGTEGCWDQLTAPRVFTLLDPQASRLTMAFLNGALDGALLGNHLSQIPRPHPPLSHLL REYYGAGVNGDPVFRSNFRRQNGAALTSAPTLAQQVWEALVLLQKLEPEHLQLQNISQEQLAQVATLATK EFTEAFLGCPAIHPRCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVR KWDDIGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDALPSCAIRA GLLRPDYKLLGHRQLVLTHCPGNALFNLLRTWPHFTEVEN
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