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Report for CCDS36980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36980.1 Public Mus musculus 14 Tpt1 23 108 98 CCDS HistoryNCBI Gene:22070Re-query CCDS DB by CCDS ID:36980.1Re-query CCDS DB by GeneID:22070See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110894.8 ENSMUSP00000106519.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110894.8Link to Ensembl Protein Viewer:ENSMUSP00000106519.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110894Re-query CCDS DB by Protein ID:ENSMUSP00000106519
Original member NCBI NM_009429.3 NP_033455.1 Updated not alive Link to Nucleotide Sequence:NM_009429.3Link to Protein Sequence:NP_033455.1Re-query CCDS DB by Nucleotide ID:NM_009429Re-query CCDS DB by Protein ID:NP_033455
Current member NCBI NM_009429.4 NP_033455.1 Accepted alive Link to Nucleotide Sequence:NM_009429.4Link to Protein Sequence:NP_033455.1Re-query CCDS DB by Nucleotide ID:NM_009429Re-query CCDS DB by Protein ID:NP_033455Link to BLAST:NP_033455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033455.1 172 P63028 172 100% 0 0

Chromosomal Locations for CCDS 36980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 75845429 75845456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75845617 75845690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75846203 75846393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75846694 75846799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75847244 75847360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75848099 75848101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGATCATCTACCGGGACCTCATCAGCCATGACGAGCTGTTCTCCGACATCTACAAGATCCGGGAGATCG
CGGACGGGCTGTGCCTGGAGGTGGAGGGCAAGATGGTCAGTAGAACAGAGGGTGCCATCGATGACTCGCT
CATCGGTGGAAATGCTTCCGCTGAAGGTCCGGAGGGCGAAGGTACCGAAAGCACAGTAGTCACCGGTGTT
GACATTGTCATGAACCATCACTTACAAGAAACCAGCTTCACAAAAGAGGCTTACAAAAAGTACATCAAAG
ACTACATGAAATCACTCAAAGGCAAACTTGAAGAGCAGAAACCAGAAAGAGTAAAGCCTTTTATGACTGG
AGCTGCAGAGCAGATTAAGCACATCCTTGCTAATTTCAATAACTACCAGTTTTTTATTGGTGAAAACATG
AATCCAGATGGTATGGTTGCTCTCCTGGACTACCGTGAAGATGGTGTGACTCCATTCATGATTTTCTTTA
AGGATGGCTTAGAGATGGAGAAATGTTAA

Translation (172 aa):
MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGEGTESTVVTGV
DIVMNHHLQETSFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFFIGENM
NPDGMVALLDYREDGVTPFMIFFKDGLEMEKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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