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Report for CCDS35827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35827.1 Public Mus musculus 1 Plxna2 23 108 98 CCDS HistoryNCBI Gene:18845Re-query CCDS DB by CCDS ID:35827.1Re-query CCDS DB by GeneID:18845See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027952.11 ENSMUSP00000027952.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027952.11Link to Ensembl Protein Viewer:ENSMUSP00000027952.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027952Re-query CCDS DB by Protein ID:ENSMUSP00000027952
Original member Current member NCBI NM_008882.2 NP_032908.2 Accepted alive Link to Nucleotide Sequence:NM_008882.2Link to Protein Sequence:NP_032908.2Re-query CCDS DB by Nucleotide ID:NM_008882Re-query CCDS DB by Protein ID:NP_032908Link to BLAST:NP_032908.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032908.2 1894 P70207 1894 100% 0 0

Chromosomal Locations for CCDS 35827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 194643760 194644947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194649456 194649638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194712184 194712318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194746130 194746230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194749312 194749435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194751376 194751529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194752053 194752149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194754320 194754434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194762399 194762599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194764482 194764578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194767371 194767561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194780513 194780664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194786567 194786684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194788779 194788915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194789721 194789888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194790111 194790204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194793729 194793968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194794373 194794516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194794823 194795057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194796907 194797049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194797540 194797808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194799510 194799576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194799775 194799921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194800501 194800660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194801043 194801146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194804903 194805002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194806282 194806472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194807502 194807671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194810062 194810274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194810857 194811007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194812066 194812161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5685 nt):
ATGGAGCAGAGGAGGTTCTATCTGCGGGCCATGCAGGCTGACAACCTGTCTGTGGTTCTGCTCTCAGTGG
CCTGGCTCCTGCTAGCTCGTGGGACCACAGGTATGCCTCAGTACAGCACTTTCCACTCTGAGAATCGTGA
CTGGACTTTCAACCATTTGACTGTACACCGAAGAACAGGGGCTGTGTATGTGGGGGCTATCAATCGTGTC
TACAAGTTGACTGGCAACCTCACCATCCAGGTGGCTCACAAGACAGGGCCAGAAGAGGACAACAAGGCTT
GCTACCCACCCCTCATTGTACAGCCCTGCAGTGAAGTGCTTACACTCACCAACAATGTCAACAAACTACT
GATCATTGACTACTCTGAGAATCGCCTGCTGGCCTGCGGAAGCCTCTACCAGGGTGTTTGCAAGCTCCTG
CGACTAGATGACCTCTTCATCCTGGTGGAGCCATCCCACAAGAAGGAACACTACTTGTCCAGTGTCAATA
AGACAGGCACCATGTATGGTGTGATTGTGCGCTCTGAGGGGGAAGATGGCAAGCTTTTTATCGGCACTGC
TGTGGATGGCAAGCAGGATTACTTCCCTACTCTGTCCAGCCGCAAGCTGCCCCGTGACCCTGAGTCTTCA
GCAATGCTGGACTATGAGCTCCACAGTGATTTTGTCTCCTCCCTCATCAAGATTCCCTCTGACACCCTAG
CCCTGGTCTCTCACTTCGACATCTTCTACATCTATGGCTTTGCCAGTGGGGGGTTTGTCTACTTTCTCAC
TGTCCAGCCAGAGACCCCTGACGGCATGGCCATCAATTCAGCTGGAGACCTCTTCTATACCTCAAGAATT
GTGCGTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATGTGTCCCTGCCTTTTGGCTGCACACGTGCTG
GGGTGGAATATCGCCTTCTGCAGGCAGCTTACCTTGCAAAGCCAGGGGAAGCTCTAGCTCAGGCCTTCAA
CATCAGCAGCGACGAAGATGTCCTGTTTGCCATCTTCTCCAAGGGGCAGAAGCAGTACCACCACCCCCCT
GATGACTCTGCCCTCTGTGCCTTCCCCATCCGGGCCATCAACTTGCAAATCAAGGAGCGGTTGCAGTCCT
GCTACCATGGAGAGGGCAACTTGGAGCTCAACTGGCTGCTGGGAAAGGATGTGCAGTGCACCAAGGCGCC
TGTCCCAATCGATGATAACTTCTGCGGCCTGGACATCAACCAGCCTCTGGGAGGCTCCACTCCTGTGGAG
GGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTTACAATGGCTACA
GTGTGGTTTTTGTGGGGACTAAGAGTGGCAAGCTGAAGAAGATTCGAGCTGATGGTCCCCCCCATGGTGG
GGTCCAGTATGAGATGGTCTCTGTGTTCAAAGATGGGAGCCCAATCCTCCGGGACATGGCCTTCTCCATC
AATCAGCTATACCTATATGTCATGTCTGAGAGACAGGTCACCAGGGTCCCTGTTGAATCATGTGAACAGT
ATACAACTTGTGGAGAGTGTCTAAGCTCAGGGGATCCTCACTGTGGCTGGTGTGCCCTGCACAACATGTG
CTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATG
AGCCTTGAGGTACACCCCAACAGCATCTCTGTGTCAGATCACAGCCGGCTGCTCAGCCTGGTTGTGAATG
ATGCTCCCAACCTCTCTGAAGGTATTGCTTGTGCCTTTGGGAATCTGACTGAGGTGGAGGGACAGGTATC
TGGGAGTCAAGTCATCTGCATCTCACCTGGACCCAAGGATGTCCCTGTCATCCCTCTGGATCAAGACTGG
TTTGGCCTAGAGCTGCAGCTGAGATCCAAAGAGACAGGAAAGATCTTTGTCAGCACCGAATTCAAGTTCT
ATAACTGCAGTGCCCACCAACTGTGCCTGTCCTGTGTTAACAGCGCCTTCCGCTGCCATTGGTGCAAGTA
CCGTAACCTCTGCACACATGACCCCACTACCTGTTCCTTCCAGGAAGGCAGGATCAATGTTTCAGAGGAC
TGTCCCCAGCTCGTGCCCACGGAGGAGATTCTGATCCCAGTTGGGGAAGTAAAACCAATCACCCTTAAGG
CCCGAAACCTGCCCCAGCCCCAGTCTGGCCAGCGAGGCTACGAGTGTGTGCTCAGCATTCAAGGGGCTGT
CCACCGGGTCCCTGCCCTGCGTTTCAACAGTTCCAGTGTGCAGTGCCAAAACAGCTCGTACCAGTATGAT
GGGATGGACATCAGCAACCTAGCAGTGGACTTTGCTGTAGTATGGAATGGCAACTTCATTATTGACAACC
CTCAGGACCTGAAAGTACATCTCTACAAGTGTGCAGCCCAGCGGGAAAGCTGTGGTCTCTGCCTCAAGGC
TGACCACAAGTTCGAGTGTGGCTGGTGCAGTGGTGAGCGCAGATGTACCCTCCACCAGCACTGCCCCAGC
ACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGATTT
TGACAGTATCAGGACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTT
CTCTGAGATTGCTCACCATGTGCAGGTGGCTGGAGTGCCCTGCACACCTATCCCAGGGGAATACATCATC
GCTGAGCAGATCGTCTGTGAGATGGGCCATGCCGTTATAGGTACCACATCTGGGCCTGTGCGCCTGTGCA
TTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCTTCTGTGCT
GTCACTCAGCCCGATCCGGGGACCAGAGTCAGGAGGTACCATGGTGACCATCACAGGCCATTACCTTGGT
GCTGGGAGCAGTGTGGCAGTGTACCTGGGCAATCAGACCTGTGAATTCTATGGGAGGTCAATGAATGAGA
TTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTGTCTCCGTGAGTGTCGACAGAGC
CCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGG
AGTATCACTAGTGGGCACACACCCCTAACCATCACAGGCTTCAACTTGGATGTCATTCAGGAGCCCAGGG
TCCGAGTCAAATTTAATGGCAAAGAATCTGTCAATGTATGCACAGTGGTAAACACAACCACCCTCACCTG
TCTGGCACCCTCTCTGACCAGTGACTACCGCCCAGGTCTGGACACTGTGGAACGGCCAGATGAGTTTGGA
TTTCTCTTTAACAATGTTCAATCCTTACTCATCTATAACGACACCAAGTTCATCTACTACCCCAACCCAA
CGTTTGAACTGCTCAGCCCCACTGGAATCTTGGATCAGAAGCCAGGCTCACCCATCATCCTGAAGGGCAA
AAATCTCTGTCCTCCTGCCTCTGGAGGGGCCAAACTCAACTACACAGTAATGATTGGAGAGACACCTTGT
ACAGTCACTGTGTCTGAGACACAGCTGCTTTGTGAACCTCCCAACCTCACAGGGCAGCACAAGGTCATGG
TTCACGTGGGCGGGATGGTGTTCTCACCTGGCTCCGTGAGCGTCATCTCCGACAGCCTGTTGACCCTGCC
AGCCATCATCAGCATCGCAGCTGGTGGAAGCCTCCTTCTTATCATCGTCATCATTGTCCTCATCGCTTAC
AAGCGCAAGTCTAGGGAAAATGACCTCACACTCAAGCGGCTCCAAATGCAAATGGACAACCTGGAGTCCA
GGGTGGCACTGGAGTGCAAGGAAGCTTTTGCGGAGCTTCAGACAGACATCAATGAGCTAACCAGTGACTT
GGATCGATCAGGAATCCCTTACCTGGACTACCGTACCTATGCCATGAGAGTCCTGTTCCCAGGCATTGAG
GACCACCCTGTTCTGCGGGAACTGGAGGTACAGGGAAATGGACAGCAGCACGTGGAGAAAGCCCTGAAAC
TCTTCGCCCAGCTTATCAACAACAAGGTGTTCTTGCTGACCTTCATCCGTACACTGGAACTACAGCGCAG
CTTCTCCATGCGAGACCGTGGGAACGTGGCCTCTCTCATCATGACAGGCCTTCAGGGTCGCCTAGAATAT
GCCACTGATGTCCTCAAGCAGCTGCTCTCTGACCTCATTGACAAGAACCTGGAGAACAAGAACCACCCCA
AGCTGCTTCTCCGCAGGACTGAGTCTGTGGCCGAGAAGATGCTGACTAACTGGTTTGCTTTTCTTCTACA
CAAGTTCCTGAAGGAGTGTGCTGGGGAACCACTCTTCATGCTATACTGTGCAATCAAGCAGCAGATGGAA
AAAGGCCCCATTGACGCTATTACTGGTGAGGCCCGATACTCCCTGAGTGAAGACAAGCTCATCCGGCAGC
AGATCGAGTATAAGACTCTGATCCTGAACTGTGTCAACCCTGACAATGAGAACAGCCCAGAGATCCCAGT
GAAAGTACTAAACTGTGACACCATCACTCAAGTCAAGGAGAAGATCCTCGATGCCGTATATAAGAATGTC
CCCTACTCCCAGCGGCCAAGGGCTGTGGACATGGATCTGGAGTGGCGCCAAGGCCGGATTGCCAGAGTGG
TGTTGCAGGACGAAGACATTACCACCAAAATAGAGGGTGACTGGAAGCGGCTTAACACACTGATGCATTA
CCAGGTGTCAGACAGATCCGTGGTGGCTCTGGTTCCTAAGCAGACCTCCTCCTACAACATCCCTGCCTCT
GCCAGCATCTCTCGGACATCCATTAGCAGATATGACTCTTCCTTCAGGTACACAGGCAGCCCAGACAGCC
TCCGGTCCCGGGTCCCCATGATCACCCCAGACTTGGAGAGCGGTGTCAAGGTTTGGCATCTGGTGAAGAA
TCATGACCATGGTGACCAGAAGGAGGGTGACCGGGGCAGCAAAATGGTGTCTGAGATCTACTTGACCCGG
CTTCTAGCCACCAAGGGCACCCTGCAGAAATTTGTGGACGACTTGTTTGAGACCTTGTTCAGCACTGTGC
ACCGGGGTAGTGCTCTCCCCCTAGCCATCAAGTACATGTTTGATTTCCTGGATGAGCAGGCAGACAGACA
CAGTATCCACGACACAGATGTGCGGCACACCTGGAAAAGCAACTGCCTTCCACTTCGTTTCTGGGTGAAT
GTCATCAAGAACCCTCAATTTGTATTTGACATCCACAAGGGCAGCATCACAGATGCCTGCCTCTCTGTGG
TAGCCCAGACCTTTATGGACTCCTGTTCCACATCAGAGCACCGACTAGGCAAGGACTCACCTTCCAACAA
GCTGCTCTATGCCAAGGATATCCCCAGTTATAAGAACTGGGTAGAAAGATACTATGCAGATATTGCCAAG
CTCCCAGCCATTAGTGACCAAGATATGAATGCCTACCTCGCGGAGCAGTCCCGCCTGCATGCTACAGAGT
TCAATATGCTGAGCGCCCTCAACGAGATCTACTCATATGTCAGCAAGTACAGTGAGGAGCTCATCGGGGC
ACTAGAGCAGGATGAACAGGCCCGACGGCAACGACTGGCCTACAAGGTGGAGCATCTCATCAACGCCATG
TCCATAGAGAGCTGA

Translation (1894 aa):
MEQRRFYLRAMQADNLSVVLLSVAWLLLARGTTGMPQYSTFHSENRDWTFNHLTVHRRTGAVYVGAINRV
YKLTGNLTIQVAHKTGPEEDNKACYPPLIVQPCSEVLTLTNNVNKLLIIDYSENRLLACGSLYQGVCKLL
RLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEGEDGKLFIGTAVDGKQDYFPTLSSRKLPRDPESS
AMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRI
VRLCKDDPKFHSYVSLPFGCTRAGVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPP
DDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDINQPLGGSTPVE
GLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI
NQLYLYVMSERQVTRVPVESCEQYTTCGECLSSGDPHCGWCALHNMCSRRDKCQRAWEANRFAASISQCM
SLEVHPNSISVSDHSRLLSLVVNDAPNLSEGIACAFGNLTEVEGQVSGSQVICISPGPKDVPVIPLDQDW
FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSFQEGRINVSED
CPQLVPTEEILIPVGEVKPITLKARNLPQPQSGQRGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYD
GMDISNLAVDFAVVWNGNFIIDNPQDLKVHLYKCAAQRESCGLCLKADHKFECGWCSGERRCTLHQHCPS
TSSPWLDWSSHNVKCSNPQITEILTVSGPPEGGTRVTIHGVNLGLDFSEIAHHVQVAGVPCTPIPGEYII
AEQIVCEMGHAVIGTTSGPVRLCIGECKPEFMTKSHQQYTFVNPSVLSLSPIRGPESGGTMVTITGHYLG
AGSSVAVYLGNQTCEFYGRSMNEIVCVSPPSSNGLGPVPVSVSVDRARVDSSLQFEYIDDPRVQRIEPEW
SITSGHTPLTITGFNLDVIQEPRVRVKFNGKESVNVCTVVNTTTLTCLAPSLTSDYRPGLDTVERPDEFG
FLFNNVQSLLIYNDTKFIYYPNPTFELLSPTGILDQKPGSPIILKGKNLCPPASGGAKLNYTVMIGETPC
TVTVSETQLLCEPPNLTGQHKVMVHVGGMVFSPGSVSVISDSLLTLPAIISIAAGGSLLLIIVIIVLIAY
KRKSRENDLTLKRLQMQMDNLESRVALECKEAFAELQTDINELTSDLDRSGIPYLDYRTYAMRVLFPGIE
DHPVLRELEVQGNGQQHVEKALKLFAQLINNKVFLLTFIRTLELQRSFSMRDRGNVASLIMTGLQGRLEY
ATDVLKQLLSDLIDKNLENKNHPKLLLRRTESVAEKMLTNWFAFLLHKFLKECAGEPLFMLYCAIKQQME
KGPIDAITGEARYSLSEDKLIRQQIEYKTLILNCVNPDNENSPEIPVKVLNCDTITQVKEKILDAVYKNV
PYSQRPRAVDMDLEWRQGRIARVVLQDEDITTKIEGDWKRLNTLMHYQVSDRSVVALVPKQTSSYNIPAS
ASISRTSISRYDSSFRYTGSPDSLRSRVPMITPDLESGVKVWHLVKNHDHGDQKEGDRGSKMVSEIYLTR
LLATKGTLQKFVDDLFETLFSTVHRGSALPLAIKYMFDFLDEQADRHSIHDTDVRHTWKSNCLPLRFWVN
VIKNPQFVFDIHKGSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPSYKNWVERYYADIAK
LPAISDQDMNAYLAEQSRLHATEFNMLSALNEIYSYVSKYSEELIGALEQDEQARRQRLAYKVEHLINAM
SIES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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