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Report for CCDS33669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33669.1 Public Homo sapiens 22 PPARA 24 110 108 CCDS HistoryNCBI Gene:5465Re-query CCDS DB by CCDS ID:33669.1Re-query CCDS DB by GeneID:5465See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402126.1 ENSP00000385246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402126.1Link to Ensembl Protein Viewer:ENSP00000385246.1Re-query CCDS DB by Nucleotide ID:ENST00000402126Re-query CCDS DB by Protein ID:ENSP00000385246
Original member Current member EBI ENST00000407236.6 ENSP00000385523.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407236.6Link to Ensembl Protein Viewer:ENSP00000385523.1Re-query CCDS DB by Nucleotide ID:ENST00000407236Re-query CCDS DB by Protein ID:ENSP00000385523
Original member Current member NCBI NM_001001928.4 NP_001001928.1 Accepted alive Link to Nucleotide Sequence:NM_001001928.4Link to Protein Sequence:NP_001001928.1Re-query CCDS DB by Nucleotide ID:NM_001001928Re-query CCDS DB by Protein ID:NP_001001928Link to BLAST:NP_001001928.1
Original member Current member NCBI NM_001001929.3 NP_001001929.1 Accepted alive Link to Nucleotide Sequence:NM_001001929.3Link to Protein Sequence:NP_001001929.1Re-query CCDS DB by Nucleotide ID:NM_001001929Re-query CCDS DB by Protein ID:NP_001001929Link to BLAST:NP_001001929.1
Original member Current member NCBI NM_001362872.2 NP_001349801.1 Accepted alive Link to Nucleotide Sequence:NM_001362872.2Link to Protein Sequence:NP_001349801.1Re-query CCDS DB by Nucleotide ID:NM_001362872Re-query CCDS DB by Protein ID:NP_001349801Link to BLAST:NP_001349801.1
Original member Current member NCBI NM_001362873.3 NP_001349802.1 Accepted alive Link to Nucleotide Sequence:NM_001362873.3Link to Protein Sequence:NP_001349802.1Re-query CCDS DB by Nucleotide ID:NM_001362873Re-query CCDS DB by Protein ID:NP_001349802Link to BLAST:NP_001349802.1
Original member Current member NCBI NM_001393941.1 NP_001380870.1 Accepted alive Link to Nucleotide Sequence:NM_001393941.1Link to Protein Sequence:NP_001380870.1Re-query CCDS DB by Nucleotide ID:NM_001393941Re-query CCDS DB by Protein ID:NP_001380870Link to BLAST:NP_001380870.1
Original member Current member NCBI NM_001393942.1 NP_001380871.1 Accepted alive Link to Nucleotide Sequence:NM_001393942.1Link to Protein Sequence:NP_001380871.1Re-query CCDS DB by Nucleotide ID:NM_001393942Re-query CCDS DB by Protein ID:NP_001380871Link to BLAST:NP_001380871.1
Original member Current member NCBI NM_001393943.1 NP_001380872.1 Accepted alive Link to Nucleotide Sequence:NM_001393943.1Link to Protein Sequence:NP_001380872.1Re-query CCDS DB by Nucleotide ID:NM_001393943Re-query CCDS DB by Protein ID:NP_001380872Link to BLAST:NP_001380872.1
Original member Current member NCBI NM_001393944.1 NP_001380873.1 Accepted alive Link to Nucleotide Sequence:NM_001393944.1Link to Protein Sequence:NP_001380873.1Re-query CCDS DB by Nucleotide ID:NM_001393944Re-query CCDS DB by Protein ID:NP_001380873Link to BLAST:NP_001380873.1
Original member Current member NCBI NM_001393945.1 NP_001380874.1 Accepted alive Link to Nucleotide Sequence:NM_001393945.1Link to Protein Sequence:NP_001380874.1Re-query CCDS DB by Nucleotide ID:NM_001393945Re-query CCDS DB by Protein ID:NP_001380874Link to BLAST:NP_001380874.1
Original member Current member NCBI NM_005036.6 NP_005027.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005036.6Link to Protein Sequence:NP_005027.2Re-query CCDS DB by Nucleotide ID:NM_005036Re-query CCDS DB by Protein ID:NP_005027Link to BLAST:NP_005027.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001928.1 468 Q07869-1 468 100% 0 0
NP_001001929.1 468 Q07869-1 468 100% 0 0
NP_001349801.1 468 Q07869-1 468 100% 0 0
NP_001349802.1 468 Q07869-1 468 100% 0 0
NP_001380870.1 468 Q07869-1 468 100% 0 0
NP_001380871.1 468 Q07869-1 468 100% 0 0
NP_001380872.1 468 Q07869-1 468 100% 0 0
NP_001380873.1 468 Q07869-1 468 100% 0 0
NP_001380874.1 468 Q07869-1 468 100% 0 0
NP_005027.2 468 Q07869-1 468 100% 0 0

Chromosomal Locations for CCDS 33669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 46198384 46198591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46215173 46215333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46218263 46218401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46219812 46220014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46231792 46232239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 46235133 46235380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGTGGACACGGAAAGCCCACTCTGCCCCCTCTCCCCACTCGAGGCCGGCGATCTAGAGAGCCCGTTAT
CTGAAGAGTTCCTGCAAGAAATGGGAAACATCCAAGAGATTTCGCAATCCATCGGCGAGGATAGTTCTGG
AAGCTTTGGCTTTACGGAATACCAGTATTTAGGAAGCTGTCCTGGCTCAGATGGCTCGGTCATCACGGAC
ACGCTTTCACCAGCTTCGAGCCCCTCCTCGGTGACTTATCCTGTGGTCCCCGGCAGCGTGGACGAGTCTC
CCAGTGGAGCATTGAACATCGAATGTAGAATCTGCGGGGACAAGGCCTCAGGCTATCATTACGGAGTCCA
CGCGTGTGAAGGCTGCAAGGGCTTCTTTCGGCGAACGATTCGACTCAAGCTGGTGTATGACAAGTGCGAC
CGCAGCTGCAAGATCCAGAAAAAGAACAGAAACAAATGCCAGTATTGTCGATTTCACAAGTGCCTTTCTG
TCGGGATGTCACACAACGCGATTCGTTTTGGACGAATGCCAAGATCTGAGAAAGCAAAACTGAAAGCAGA
AATTCTTACCTGTGAACATGACATAGAAGATTCTGAAACTGCAGATCTCAAATCTCTGGCCAAGAGAATC
TACGAGGCCTACTTGAAGAACTTCAACATGAACAAGGTCAAAGCCCGGGTCATCCTCTCAGGAAAGGCCA
GTAACAATCCACCTTTTGTCATACATGATATGGAGACACTGTGTATGGCTGAGAAGACGCTGGTGGCCAA
GCTGGTGGCCAATGGCATCCAGAACAAGGAGGCGGAGGTCCGCATCTTTCACTGCTGCCAGTGCACGTCA
GTGGAGACCGTCACGGAGCTCACGGAATTCGCCAAGGCCATCCCAGGCTTCGCAAACTTGGACCTGAACG
ATCAAGTGACATTGCTAAAATACGGAGTTTATGAGGCCATATTCGCCATGCTGTCTTCTGTGATGAACAA
AGACGGGATGCTGGTAGCGTATGGAAATGGGTTTATAACTCGTGAATTCCTAAAAAGCCTAAGGAAACCG
TTCTGTGATATCATGGAACCCAAGTTTGATTTTGCCATGAAGTTCAATGCACTGGAACTGGATGACAGTG
ATATCTCCCTTTTTGTGGCTGCTATCATTTGCTGTGGAGATCGTCCTGGCCTTCTAAACGTAGGACACAT
TGAAAAAATGCAGGAGGGTATTGTACATGTGCTCAGACTCCACCTGCAGAGCAACCACCCGGACGATATC
TTTCTCTTCCCAAAACTTCTTCAAAAAATGGCAGACCTCCGGCAGCTGGTGACGGAGCATGCGCAGCTGG
TGCAGATCATCAAGAAGACGGAGTCGGATGCTGCGCTGCACCCGCTACTGCAGGAGATCTACAGGGACAT
GTACTGA

Translation (468 aa):
MVDTESPLCPLSPLEAGDLESPLSEEFLQEMGNIQEISQSIGEDSSGSFGFTEYQYLGSCPGSDGSVITD
TLSPASSPSSVTYPVVPGSVDESPSGALNIECRICGDKASGYHYGVHACEGCKGFFRRTIRLKLVYDKCD
RSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSETADLKSLAKRI
YEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTS
VETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKP
FCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDI
FLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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