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Report for CCDS31569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31569.1 Public Homo sapiens 11 MS4A14 24 110 108 CCDS HistoryNCBI Gene:84689Re-query CCDS DB by CCDS ID:31569.1Re-query CCDS DB by GeneID:84689See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300187.11 ENSP00000300187.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300187.11Link to Ensembl Protein Viewer:ENSP00000300187.6Re-query CCDS DB by Nucleotide ID:ENST00000300187Re-query CCDS DB by Protein ID:ENSP00000300187
Original member Current member NCBI NM_032597.5 NP_115986.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032597.5Link to Protein Sequence:NP_115986.3Re-query CCDS DB by Nucleotide ID:NM_032597Re-query CCDS DB by Protein ID:NP_115986Link to BLAST:NP_115986.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115986.3 679 Q96JA4-1 679 100% 0 0

Chromosomal Locations for CCDS 31569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60396579 60396716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60397852 60397980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60400404 60400454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60402912 60403061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60415437 60417008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGAGTCAACATCCCAGGACAGAAGGGCAACTCACGTCATCACTATAAAACCAAACGAAACTGTATTGA
CTGCATTTCCCTACAGACCTCATAGCTCTCTGCTGGATTTTCTGAAGGGAGAGCCAAGAGTCTTGGGGGC
TACCCAGATCCTGCTTGCTCTAATCATTGTGGGCTTTGGAACTATATTTGCACTTAATTACATCGGTTTC
TCCCAAAGACTTCCCCTTGTTGTCCTCACAGGATATCCATTCTGGGGAGCACTTATTTTTATTCTTACAG
GATACCTCACAGTAACCGATAAGAAATCAAAACTTCTGGGTCAAGGTGTCACGGGCATGAATGTTATCAG
CTCCTTGGTTGCGATAACTGGGATTACTTTCACCATTCTCAGCTACAGACATCAAGACAAGTACTGCCAG
ATGCCATCCTTTGAAGAAATATGTGTTTTCAGTAGAACTCTTTTCATTGTTCTGTTTTTCTTGCCTTCGG
ATGTTACTCAAAATAGTGAACAACCTGCCCCAGAAGAAAATGATCAATTACAATTTGTGCTTCAAGAAGA
GTTTTCCAGTGATGATTCAACAACAAATGCACAATCTGTTATCTTTGGAGGCTATGCTTTCTTCAAGTTA
ACACTCTCTAGGAGTCCTTTAGTCTCCCAACCAGGTAATAAAGGTAGAGAATTTGTGCCAGATGAACAAA
AGCAAAGTATCCTTCCATCTCCCAAATTTTCAGAGGAAGAAATTGAACCTTTGCCTCCCACACTAGAGAA
AAAGCCCTCAGAAAATATGTCCATTCAGCTAGACTCTACATTTAAACAAATGAAAGATGAAGATCTACAA
TCTGCTATTGTACAACCTTCTCAAATGCAAACCAAGCTTCTGCAGGACCAAGCTGCGTCACTCCAAGTTT
TTCCATCCCATTCTGCACTAAAACTCGAAGATATATCACCTGAAGACTTGCCATCCCAAGCTCTACCAGT
AGAAGGCCTGTCAGAACAAACCATGCCATCTAAGTCTACATCATCCCATGTCAAACAGTCTTCTAATCTG
ACAGCTAATGACCTGCCCCCTCAAGGCATACTATCCCAAGACACATCATCTCAAGATATGCTGTTTCATG
ACATGACATCCCAAGATATGCAATCCCTAGATATGCTATCTCAAGACACACCATCCCACGCCATGCCACC
TCAAGACATACCTTCCCAAGATATGCTATCCCAAGCTCTATCAGCGCATGCCATATTACCTGAAGCCTCA
ACATCCCATATTGTGCAGTTCCCTGAAATACAACACCTACTTCAGCAGCCCCCAGATCTTCAACCAGAAA
ACACTGAACCTCAAAACCAGCAAATTTTACAAATGTCATATCAAGATATTAGATCAGAAGTTATGGAAGA
GACCAAAGAATGGAAATCTGAGGAGGAACTCCATAGAAGAAAATCCTCAAGACGGCATTCCTTAAACCAG
CAAACCAAAGCCTTGCAATACTTAAGGAGACATTCTTTAGACGTGCAAGCCAAAGGCCAGAAATCCTCAA
AGAGGCATTCCTTAGATCAGCAAAGCAAAGGCTGGCAATCTCCAAAGCAGAAATCCTTAGACCAGCAAAT
CAAAGACTGGCTATCCCCAAAGAGGCACTCCGTAGATAAGCAAGCTCAACTTAATCAAACTAAAGAGCAA
CTCCCAGATCAGCAAGCTGAAGATCAGCAAGCCAAAGGGGAACAATACCCAGAAGGACAATCTAAAGATG
GACAAGTTAAAGACCAGCAGACTGATAAGGAGCAAAACTCAAAGAAGCAAACCCAGGATCAGCAAACTGA
AGACCAGCCGGCCCAAGAGAAGAAATCCCCGAAAGGACAATTCCAAAATGTTCAAGCCGAAGGACAGCAA
GCTCAGGTGGAGAAAGTGCCAAAACTGTTATGCCAAGATTCAGAATCCCAAATACAGCAATACCAATTCT
GGCAATTCCACAAAGGCAATCTCCAGGCTGGACAACCCAGGACTGTCAATCTTTTGGCCAAGAATCCCCT
GACTGGATAA

Translation (679 aa):
MESTSQDRRATHVITIKPNETVLTAFPYRPHSSLLDFLKGEPRVLGATQILLALIIVGFGTIFALNYIGF
SQRLPLVVLTGYPFWGALIFILTGYLTVTDKKSKLLGQGVTGMNVISSLVAITGITFTILSYRHQDKYCQ
MPSFEEICVFSRTLFIVLFFLPSDVTQNSEQPAPEENDQLQFVLQEEFSSDDSTTNAQSVIFGGYAFFKL
TLSRSPLVSQPGNKGREFVPDEQKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQ
SAIVQPSQMQTKLLQDQAASLQVFPSHSALKLEDISPEDLPSQALPVEGLSEQTMPSKSTSSHVKQSSNL
TANDLPPQGILSQDTSSQDMLFHDMTSQDMQSLDMLSQDTPSHAMPPQDIPSQDMLSQALSAHAILPEAS
TSHIVQFPEIQHLLQQPPDLQPENTEPQNQQILQMSYQDIRSEVMEETKEWKSEEELHRRKSSRRHSLNQ
QTKALQYLRRHSLDVQAKGQKSSKRHSLDQQSKGWQSPKQKSLDQQIKDWLSPKRHSVDKQAQLNQTKEQ
LPDQQAEDQQAKGEQYPEGQSKDGQVKDQQTDKEQNSKKQTQDQQTEDQPAQEKKSPKGQFQNVQAEGQQ
AQVEKVPKLLCQDSESQIQQYQFWQFHKGNLQAGQPRTVNLLAKNPLTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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