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Report for CCDS2964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2964.1 Public Homo sapiens 3 GCSAM 24 110 108 CCDS HistoryNCBI Gene:257144Re-query CCDS DB by CCDS ID:2964.1Re-query CCDS DB by GeneID:257144See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308910.9 ENSP00000309487.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308910.9Link to Ensembl Protein Viewer:ENSP00000309487.4Re-query CCDS DB by Nucleotide ID:ENST00000308910Re-query CCDS DB by Protein ID:ENSP00000309487
Original member Current member NCBI NM_152785.5 NP_689998.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152785.5Link to Protein Sequence:NP_689998.1Re-query CCDS DB by Nucleotide ID:NM_152785Re-query CCDS DB by Protein ID:NP_689998Link to BLAST:NP_689998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689998.1 178 Q8N6F7-1 178 100% 0 0

Chromosomal Locations for CCDS 2964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112123455 112123772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112125226 112125254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112126987 112127033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112128017 112128061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112130445 112130513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112133092 112133120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGGAAATTCTCTGCTGAGAGAAAACAGGCGGCAGCAGAACACTCAAGAGATGCCTTGGAATGTGAGAA
TGCAAAGCCCCAAACAGAGAACATCCAGATGCTGGGATCACCATATCGCTGAAGGGTGTTTCTGCCTTCC
ATGGAAAAAAATACTCATTTTTGAAAAGAGGCAAGATTCCCAAAACGAAAATGAAAGAATGTCATCTACT
CCCATCCAGGACAATGTTGACCAGACCTACTCAGAGGAGCTGTGCTATACCCTCATCAATCATCGGGTTC
TCTGTACAAGGCCATCAGGGAACTCTGCTGAAGAGTACTATGAGAATGTTCCCTGCAAAGCTGAGAGACC
CAGAGAGTCCTTGGGAGGAACTGAGACTGAGTATTCACTTCTACATATGCCTTCTACAGACCCCAGGCAT
GCCCGATCCCCAGAAGATGAATATGAACTTCTCATGCCTCACAGAATCTCCTCTCACTTTCTGCAACAGC
CACGTCCACTTATGGCCCCTTCTGAGACTCAGTTTTCCCATTTATAG

Translation (178 aa):
MGNSLLRENRRQQNTQEMPWNVRMQSPKQRTSRCWDHHIAEGCFCLPWKKILIFEKRQDSQNENERMSST
PIQDNVDQTYSEELCYTLINHRVLCTRPSGNSAEEYYENVPCKAERPRESLGGTETEYSLLHMPSTDPRH
ARSPEDEYELLMPHRISSHFLQQPRPLMAPSETQFSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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