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Report for CCDS29391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29391.1 Public Mus musculus 18 Cd226 23 108 98 CCDS HistoryNCBI Gene:225825Re-query CCDS DB by CCDS ID:29391.1Re-query CCDS DB by GeneID:225825See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097496.3 ENSMUSP00000095104.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097496.3Link to Ensembl Protein Viewer:ENSMUSP00000095104.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097496Re-query CCDS DB by Protein ID:ENSMUSP00000095104
Original member Current member NCBI NM_001039149.1 NP_001034238.1 Accepted alive Link to Nucleotide Sequence:NM_001039149.1Link to Protein Sequence:NP_001034238.1Re-query CCDS DB by Nucleotide ID:NM_001039149Re-query CCDS DB by Protein ID:NP_001034238Link to BLAST:NP_001034238.1

Chromosomal Locations for CCDS 29391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 89206596 89206641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89246985 89247332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89263271 89263367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89267900 89267957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89268968 89269081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGCTTATGTTACTTGGCTTTTGGCTATTCTTCATGTGCACAAAGATAGTTTTGAGATAGCAGCACCCT
CGGATAGCTACCTGTCTGCAGAACCTGGACAAGATGTCACACTCACTTGCCAGCTTCCAAGGACTTGGCC
AGTGCAACAAGTCATATGGGAAAAAGTCCAGCCCCATCAGGTAGACATCTTAGCTTCCTGTAACCTATCT
CAAGAGACAAGATACACTTCAAAGTACCTAAGACAAACAAGGAGCAACTGTAGCCAGGGGAGCATGAAGA
GCATCCTCATCATTCCAAATGCCATGGCCGCTGACTCAGGACTTTACAGATGTCGCTCAGAGGCCATTAC
AGGAAAAAACAAGTCCTTTGTCATAAGGCTGATCATAACTGATGGTGGAACCAATAAACATTTTATCCTT
CCCATCGTTGGAGGGTTAGTTTCACTGTTACTTGTCATCCTAATTATCATCATTTTCATTTTATATAACA
GGAAGAGACGGAGACAGGTGAGAATTCCACTTAAAGAGCCCAGGGATAAACAGAGTAAGGTAGCCACCAA
CTGCAGAAGTCCTACTTCTCCCATCCAGTCTACAGATGATGAAAAAGAGGACATTTATGTAAACTATCCA
ACTTTCTCTCGAAGACCAAAACCAAGACTCTAA

Translation (220 aa):
MAYVTWLLAILHVHKDSFEIAAPSDSYLSAEPGQDVTLTCQLPRTWPVQQVIWEKVQPHQVDILASCNLS
QETRYTSKYLRQTRSNCSQGSMKSILIIPNAMAADSGLYRCRSEAITGKNKSFVIRLIITDGGTNKHFIL
PIVGGLVSLLLVILIIIIFILYNRKRRRQVRIPLKEPRDKQSKVATNCRSPTSPIQSTDDEKEDIYVNYP
TFSRRPKPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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